Bioeconomy Science Center
Research and cooperation for a sustainable bioeconomy

Bioeconomy Science Center
Research and cooperation for a sustainable bioeconomy



Burmeister, A., et al. (2019). "A microfluidic co-cultivation platform to investigate microbial interactions at defined microenvironments." Lab on a Chip 19(1): 98-110. HyImPact, CombiCom

Courville, K. J., et al. (2019). "Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors." New Phytologist. PlaMint

Hemmerich, J., et al. (2019). "Combinatorial impact of Sec signal peptides from Bacillus subtilis and bioprocess conditions on heterologous cutinase secretion by Corynebacterium glutamicum." Biotechnol Bioeng 116(3): 644-655. 

Kallscheuer, N., et al. (2019). "Identification and Microbial Production of the Raspberry Phenol Salidroside that Is Active against Huntington’s Disease." Plant Physiol 179(3): 969-985. PNP-EXPRESS

Klein, S., et al. (2019). "Influence of the ethylene related signal-inhibiting octapeptide NOP-1 on postharvest ripening and quality of ‘Golden Delicious’ apples." J. Sci. Food Agric.

Nietzel, T., et al. (2019). "The fluorescent protein sensor roGFP2-Orp1 monitors in vivo H2O2 and thiol redox integration and elucidates intracellular H2O2 dynamics during elicitor-induced oxidative burst in Arabidopsis."  221(3): 1649-1664. PlaMint

Noack S, Baumgart M (2019). Communities of Niche-Optimized Strains: Small-Genome Organism Consortia in Bioproduction. Trends in Biotechnology 37(2): 126-139. HyImPAct

Schwinges et al (2019). A bifuncitonal dermasseptin-thanatin dipeptide functionalizes the crop surface for sustainable pest management. Green Chemistry

 Wever C, Höller M, Becker L, Biertümpfel A, Köhler J, Van Inghelandt D, Westhoff P, Pude R, Pestsova E. 2019. Towards high-biomass yielding bioenergy crop Silphium perfoliatum L.: phenotypic and genotypic evaluation of five cultivated populations. Biomass and Bioenergy 124: 102-113 SPREAD



J. Aschenbroich, K. Hußnätter, P. Stoffels, T. Langner, S. Zander, B. Sandrock, M. Bölker, M. Feldbrügge and K. Schipper (2018) The germinal centre kinase Don3 is crucial for unconventional secretion of chitinase Cts1 in Ustilago maydis. BBA: Proteins and Proteomics, special issue unconventional protein secretion. BBA - Proteins and Proteomics

Baaske, J., et al. (2018). "Dual-controlled optogenetic system for the rapid down-regulation of protein levels in mammalian cells." Sci Rep 8(1): 15024.

Berg, S., et al. (2018). "Collective stakeholder representations and perceptions of drivers of novel biomass-based value chains." Journal of Cleaner Production 200: 231-24

Bollinger, A., et al. (2018). "The biotechnological potential of marine bacteria in the novel lineage of Pseudomonas pertucinogena." Microbial Biotechnology. Bio2

Borge, L. and S. Bröring (2018). "What affects technology transfer in emerging knowledge areas? A multi-stakeholder concept mapping study in the bioeconomy." Journal of Technology Transfer.
Bronikowski, A., et al. (2018). "Redesign of a New Manganese Peroxidase Highly Expressed in Pichia pastoris towards a Lignin-Degrading Versatile Peroxidase." ChemBioChem 19(23): 2481-2489. BioDeg
Carraresi, L., et al. (2018). "Emerging value chains within the bioeconomy: Structural changes in the case of phosphate recovery." Journal of Cleaner Production 183: 87-101. P-ENG
Champreda, V., et al. (2018). "Elucidating cellular mechanisms of Saccharomyces cerevisiae tolerant to combined lignocellulosic-derived inhibitors using high-throughput phenotyping and multiomics analyses." FEMS Yeast Research 18(8). HyImPAct
Classen, T. and J. Pietruszka (2018). "Complex molecules, clever solutions – Enzymatic approaches towards natural product and active agent syntheses." Bioorganic & Medicinal Chemistry 26(7): 1285-1303. CombiCom
Eck, A., et al. (2018). "Improved microscale cultivation of Pichia pastoris for clonal screening." Fungal Biol Biotechnol 5: 8-8. P-ENG

Endres, S., et al. (2018). "An optogenetic toolbox of LOV-based photosensitizers for light-driven killing of bacteria." Sci Rep 8(1): 15021.

Freier, L. and E. von Lieres (2018). "Robust Multi-Objective Global Optimization of Stochastic Processes With a Case Study in Gradient Elution Chromatography." Biotechnology Journal 13(1): 1700257.

Freudl, R. (2018). "Signal peptides for recombinant protein secretion in bacterial expression systems." Microbial Cell Factories 17(1): 52.

Groher, T., et al. (2018). "Suitability of fluorescence indices for the estimation of fruit maturity compounds in tomato fruits." Journal of the Science and Food Agriculture 98(15): 5656-5665. InducTomE
Groher, T., et al. (2018). "Limitation of mineral supply as tool for the induction of secondary metabolites accumulation in tomato leaves." Plant Physiology and Biochemistry 130: 105-111. InducTomE
Hage-Hülsmann, J., et al. (2018). "Natural biocide cocktails: Combinatorial antibiotic effects of prodigiosin and biosurfactants." PLoS One 13(7): e0200940. CombiCom
Hartmann, S. K., et al. (2018). "Online in vivo monitoring of cytosolic NAD redox dynamics in Ustilago maydis." Biochimica et Biophysica Acta (BBA) - Bioenergetics 1859(10): 1015-1024. ROXENSE
Hemmerich, J., et al. (2018). "Microbioreactor Systems for Accelerated Bioprocess Development." Biotechnology Journal 13(4): 1700141.
Hemmerich, J., et al. (2018). "Less Sacrifice, More Insight: Repeated Low-Volume Sampling of Microbioreactor Cultivations Enables Accelerated Deep Phenotyping of Microbial Strain Libraries." Biotechnology Journal. HyImPAct
Herweg, E., et al. (2018). "Production of the potential sweetener 5-ketofructose from fructose in fed-batch cultivation with Gluconobacter oxydans." Bioresource Technology 259: 164-172.
Ihling, N., et al. (2018). "Online measurement of the respiratory activity in shake flasks enables the identification of cultivation phases and patterns indicating recombinant protein production in various Escherichia coli host strains." Biotechnol. Prog. 34(2): 315-327.
Jäger, V. D., et al. (2018). "A Synthetic Reaction Cascade Implemented by Colocalization of Two Proteins within Catalytically Active Inclusion Bodies." ACS Synthetic Biology 7(9): 2282-2295.

Kallscheuer, N. and J. Marienhagen (2018). "Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids." Microbial Cell Factories 17(1): 70-70. HyImPAct
Klein, A. S., et al. (2018). "Cover Feature: Preparation of Cyclic Prodiginines by Mutasynthesis in Pseudomonas putida KT2440." ChemBioChem 19(14): 1462-1462. CombiCom, Bio2
Kloss, R., et al. (2018). "Tailor-made catalytically active inclusion bodies for different applications in biocatalysis." Catalysis Science & Technology 8(22): 5816-5826.
Kloss, R., et al. (2018). "Catalytically active inclusion bodies of L-lysine decarboxylase from E. coli for 1,5-diaminopentane production." Sci Rep 8(1): 5856-5856. CatIBs
Kranz, A., et al. (2018). "Global mRNA decay and 23S rRNA fragmentation in Gluconobacter oxydans 621H." BMC genomics 19(1): 753-753.
Milić, D., et al. (2018). "Recognition motif and mechanism of ripening inhibitory peptides in plant hormone receptor ETR1." Sci Rep 8(1): 3890-3890. RIPE
Morschett, H., et al. (2018). "Laboratory-scale photobiotechnology—current trends and future perspectives." FEMS Microbiology Letters 365(1).
Müller, M. J., et al. (2018). "Online evaluation of the metabolic activity of Ustilago maydis on (poly)galacturonic acid." Journal of Biological Engineering 12(1): 34. PectiLyse

Pariyar, S. and G. Noga (2018). "Rainfall does not impair particulate matter accumulation on peri-urban field crops, but improves photosynthetic activity at UV exposure." Environmental and Experimental Botany 156.
Schreiber, C, Schiedung, H, Harrison, L, Briese, C, Ackermann, B, Kant, J, Schrey, SD, Hofmann, D, Singh, D, Ebenhöh, O, Amelung, W, Schurr, U, Mettler-Altmann, T, Huber, G, Jablonowski, ND and Nedbal, L (2018). Evaluating potential of green alga Chlorella vulgaris to accumulate phosphorus and to fertilize nutrient-poor soil substrates for crop plants. Journal of Applied Phycology.  AlgalFertilizer

Siebers, M., et al. (2018). "Disruption of microbial community composition and identification of plant growth promoting microorganisms after exposure of soil to rapeseed-derived glucosinolates." PLoS One 13(7): e0200160.
Siemen, A., et al. (2018). "Production of 5-ketofructose from fructose or sucrose using genetically modified Gluconobacter oxydans strains." Appl Microbiol Biotechnol 102(4): 1699-1710. GLUFACT

Singh, D., et al. (2018). "Modelling phosphorus uptake in microalgae." Biochemical Society Transactions 46(2): 483-490. AlgalFertilizer
Tenhaef, N., et al. (2018). "Production of d-xylonic acid using a non-recombinant Corynebacterium glutamicum strain." Bioresource Technology 268: 332-339. HyImPAct
Terfrüchte, M., et al. (2018). "Tackling destructive proteolysis of unconventionally secreted heterologous proteins in Ustilago maydis." J Biotechnol 284: 37-51. UstiOpt
Uluca, B., et al. (2018). "DNP-Enhanced MAS NMR: A Tool to Snapshot Conformational Ensembles of α-Synuclein in Different States." Biophysical Journal 114(7): 1614-1623.

Unrean, P., et al. (2018). "Elucidating cellular mechanisms of Saccharomyces cerevisiae tolerant to combined lignocellulosic-derived inhibitors using high-throughput phenotyping and multiomics analyses." FEMS Yeast Research 18(8).     

Weidener, D., et al. (2018). "One-Step Lignocellulose Fractionation by using 2,5-Furandicarboxylic Acid as a Biogenic and Recyclable Catalyst." ChemSusChem 11(13): 2051-2056. AP3
Zhang, S., et al. (2018). "Biocatalytically Active Thin Films via Self-Assembly of 2-Deoxy-d-ribose-5-phosphate Aldolase–Poly(N-isopropylacrylamide) Conjugates." Bioconjugate Chemistry 29(1): 104-116. FlowCom



Borge, L and Bröring, S (2017). Exploring effectiveness of technology transfer in interdisciplinary settings: The case of the bioeconomy. Creativity and Innovation Management 26(3): 311-322.  S2B-BioEcon

Bronikowski, A, Hagedoorn, P-L, Koschorreck, K and Urlacher, VB (2017). Expression of a new laccase from Moniliophthora roreri at high levels in Pichia pastoris and its potential application in micropollutant degradation. AMB Express 7: 73. BioDeg

Damm, T, Grande, PM, Jablonowski, ND, Thiele, B, Disko, U, Mann, U, Schurr, U, Leitner, W, Usadel, B, Domínguez de María, P and Klose, H (2017). OrganoCat pretreatment of perennial plants: Synergies between a biogenic fractionation and valuable feedstocks. Bioresource Technology 244(Part 1): 889-896.  OrCaCel

Damm, T, Pattathil, S, Günl, M, Jablonowski, ND, O'Neill, M, Grün, KS, Grande, PM, Leitner, W, Schurr, U, Usadel, B and Klose, H (2017). Insights into cell wall structure of sida hermaphrodita and its influence on recalcitrance. Carbohydrate Polymers 168: 94-102.   OrCaCel

De Col, V, Fuchs, P, Nietzel, T, Elsasser, M, Voon, CP, Candeo, A, Seeliger, I, Fricker, MD, Grefen, C, Moller, IM, Bassi, A, Lim, BL, Zancani, M, Meyer, AJ, Costa, A, Wagner, S and Schwarzlander, M (2017). ATP sensing in living plant cells reveals tissue gradients and stress dynamics of energy physiology. Elife 6.   CoSens

Domröse, A, Weihmann, R, Thies, S, Jaeger, K-E, Drepper, T and Loeschcke, A (2017). Rapid generation of recombinant Pseudomonas putida secondary metabolite producers using yTREX. Synthetic and Systems Biotechnology 2(4): 310-319.   CombiCom

Frantzeskakis, L, Courville, KJ, Plucker, L, Kellner, R, Kruse, J, Brachmann, A, Feldbrugge, M and Gohre, V (2017). The plant-dependent life cycle of thecaphora thlaspeos: A smut fungus adapted to brassicaceae. Mol Plant Microbe Interact: Mpmi08160164r.   PlaMint

Hartl, K, Denton, A, Franz-Oberdorf, K, Hoffmann, T, Spornraft, M, Usadel, B and Schwab, W (2017). Early metabolic and transcriptional variations in fruit of natural white-fruited fragaria vesca genotypes. Sci Rep 7: 45113.    PNP-EXPRESS; MoRe-Plants

Heck, A and Drepper, T (2017). Engineering photosynthetic α-proteobacteria for the production of recombinant proteins and terpenoids. Modern topics in the phototrophic prokaryotes: Environmental and applied aspects. Hallenbeck, P.C. Cham, Springer International Publishing: 395-425.   BIOExpresSPro

Hemmerich, J., et al. (2017). "Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology." J Vis Exp(130): 56234.

Heydenreich, FM, Miljus, T, Jaussi, R, Benoit, R, Milic, D and Veprintsev, DB (2017). High-throughput mutagenesis using a two-fragment PCR approach. Sci Rep 7(1): 6787. RIPE

Hussner, A, Stiers, I, Verhofstad, MJJM, Bakker, ES, Grutters, BMC, Haury, J, van Valkenburg, JLCH, Brundu, G, Newman, J, Clayton, JS, Anderson, LWJ and Hofstra, D (2017). Management and control methods of invasive alien freshwater aquatic plants: A review. Aquatic Botany 136: 112-137.   AquaPro

Jablonowski, ND, Kollmann, T, Nabel, M, Damm, T, Klose, H, Müller, M, Bläsing, M, Seebold, S, Krafft, S, Kuperjans, I, Dahmen, M and Schurr, U (2017). Valorization of sida (sida hermaphrodita) biomass for multiple energy purposes. GCB Bioenergy 9(1): 202-214.   OrCaCel 

Junker LV, Thiele B, Wiese-Klinkenberg A (2017) Induktion des Sekundärmetabolismus in Tomatenpflanzen zur alternativen Verwendung der Blattbiomasse. DGG-Proceedings, 7(10), 1-5. InducTomE

Kellner, R and Göhre, V (2017). Thecaphora thlaspeos–ein Brandpilz spezialisiert auf Modellpflanzen. BIOspektrum 23(5): 498-500.  PlaMint

Kessenbrock, M, Klein, SM, Muller, L, Hunsche, M, Noga, G and Groth, G (2017). Novel Protein-Protein Inhibitor Based Approach to Control Plant Ethylene Responses: Synthetic Peptides for Ripening Control. Front Plant Sci 8: 1528. RIPE

Krauss, U, Jager, VD, Diener, M, Pohl, M and Jaeger, KE (2017). Catalytically-active inclusion bodies-Carrier-free protein immobilizates for application in biotechnology and biomedicine. J Biotechnol 258: 136-147. CatIBs

Loeschcke, A, Dienst, D, Wewer, V, Hage-Hulsmann, J, Dietsch, M, Kranz-Finger, S, Huren, V, Metzger, S, Urlacher, VB, Gigolashvili, T, Kopriva, S, Axmann, IM, Drepper, T and Jaeger, KE (2017). The photosynthetic bacteria Rhodobacter capsulatus and Synechocystis sp. PCC 6803 as new hosts for cyclic plant triterpene biosynthesis. PLoS One 12(12): e0189816.   CombiCom

Meurer, RA, Kemper, S, Knopp, S, Eichert, T, Jakob, F, Goldbach, HE, Schwaneberg, U and Pich, A (2017). Biofunctional Microgel-Based Fertilizers for Controlled Foliar Delivery of Nutrients to Plants. Angew Chem Int Ed Engl 56(26): 7380-7386.  RIPEGreenGel

Moudříková, Š, Nedbal, L, Solovchenko, A and Mojzeš, P (2017). Raman microscopy shows that nitrogen-rich cellular inclusions in microalgae are microcrystalline guanine. Algal Research 23: 216-222.   AlgalFertilizer

Moudrikova, S, Sadowsky, A, Metzger, S, Nedbal, L, Mettler-Altmann, T and Mojzes, P (2017). Quantification of Polyphosphate in Microalgae by Raman Microscopy and by a Reference Enzymatic Assay. Anal Chem 89(22): 12006-12013.   AlgalFertilizer

Pompa, A, De Marchis, F, Pallotta, MT, Benitez-Alfonso, Y, Jones, A, Schipper, K, Moreau, K, Zarsky, V, Di Sansebastiano, GP and Bellucci, M (2017). Unconventional transport routes of soluble and membrane proteins and their role in developmental biology. Int J Mol Sci 18(4).   UstiOpt

Reinicke, S, Rees, HC, Espeel, P, Vanparijs, N, Bisterfeld, C, Dick, M, Rosencrantz, RR, Brezesinski, G, de Geest, BG, Du Prez, FE, Pietruszka, J and Boker, A (2017). Immobilization of 2-deoxy-d-ribose-5-phosphate aldolase in polymeric thin films via the langmuir-schaefer technique. ACS Appl Mater Interfaces 9(9): 8317-8326.   FlowCom

Terfrüchte, M, Reindl, M, Jankowski, S, Sarkari, P, Feldbrügge, M and Schipper, K (2017). Applying unconventional secretion in ustilago maydis for the export of functional nanobodies. International Journal of Molecular Sciences 18(5): 937.  UstiOpt

Tiso T, Zauter R, Tulke H, Leuchtle B, Li WJ, Behrens B, Wittgens A, Rosenau F, Hayen H, Blank LM (2017) Designer rhamnolipids by reduction of congener diversity: production and characterization. Microb Cell Fact 16(1):225. NovoSurf

Viennet, T., et al. (2017). "A structural and kinetic link between membrane association and amyloid fibril formation of α-Synuclein." bioRxiv: 173724.

Welters, T, Horn, T, Ruff, AJ, Schwaneberg, U and Buchs, J (2017). Novel technique for high throughput measurement of active monooxygenase concentration. Biotechnol Bioeng 114(4): 929-933.   MoRe-Plants

Worgull, D, Öhler, L, Strache, JP, Friedrichs, T, and Ullrich, P (2017) Enantioselective synthesis of 2,3-dihydrofurans via ammonium ylides. Eur J Org Chem, 6077-6080. PrimACs

Zambanini, T, Hartmann, SK, Schmitz, LM, Büttner, L, Tehrani, HH, Geiser, E, Beudels, M, Venc, D, Wandrey, G, Büchs, J, Schwarzländer, M, Blank, LM, and Wierckx, N (2017)   Promoters from the itaconate cluster of Ustilago maydis are induced by nitrogen depletion. Fungal Biol Biotechnol 4:11.  ROXENSE

Zhao, X, Noack, S, Wiechert, W and Lieres, EV (2017). Dynamic flux balance analysis with nonlinear objective function. J Math Biol.   BEProMod



Alexander, A and Hunsche, M (2016). Influence of formulation on the cuticular penetration and on spray deposit properties of manganese and zinc foliar fertilizers. Agronomy 6(3): 39.   BiFuProts 

Bisterfeld, C, Küberl, I, Dick, M and Pietruszka, J (2016). A fluorogenic screening for enantio- and diastereoselectivity of 2-deoxy-d-ribose-5-phosphate aldolases. Synlett 27(01): 11-16.   FlowCom

Bosch, K, Frantzeskakis, L, Vranes, M, Kamper, J, Schipper, K and Gohre, V (2016). Genetic manipulation of the plant pathogen ustilago maydis to study fungal biology and plant microbe interactions. J Vis Exp(115).   PlaMint

Damm, T, Commandeur, U, Fischer, R, Usadel, B and Klose, H (2016). Improving the utilization of lignocellulosic biomass by polysaccharide modification. Process Biochemistry 51(2): 288-296.   OrCaCel

Dick, M, Hartmann, R, Weiergraber, OH, Bisterfeld, C, Classen, T, Schwarten, M, Neudecker, P, Willbold, D and Pietruszka, J (2016). Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: Structural insights and protective strategies. Chemical Science 7(7): 4492-4502.   FlowCom

Dick, M, Weiergräber, OH, Classen, T, Bisterfeld, C, Bramski, J, Gohlke, H and Pietruszka, J (2016). Trading off stability against activity in extremophilic aldolases. Scientific Reports 6: 17908.   FlowCom

Diener, M, Kopka, B, Pohl, M, Jaeger, K-E and Krauss, U (2016). Fusion of a coiled-coil domain facilitates the high-level production of catalytically active enzyme inclusion bodies. ChemCatChem 8(1): 142-152.   CatIBs

Freier, L, Hemmerich, J, Schöler, K, Wiechert, W, Oldiges, M and von Lieres, E (2016). Framework for kriging-based iterative experimental analysis and design: Optimization of secretory protein production in corynebacterium glutamicum. Engineering in Life Sciences 16(6): 538-549.   BIOExpresSPro

Geiser, E, Ludwig, F, Zambanini, T, Wierckx, N and Blank, LM (2016). Draft genome sequences of itaconate-producing ustilaginaceae. Genome Announc 4(6).   PectiLyse

Geiser, E, Przybilla, SK, Engel, M, Kleineberg, W, Buttner, L, Sarikaya, E, Hartog, TD, Klankermayer, J, Leitner, W, Bolker, M, Blank, LM and Wierckx, N (2016). Genetic and biochemical insights into the itaconate pathway of ustilago maydis enable enhanced production. Metab Eng 38: 427-435.  

Geiser, E, Reindl, M, Blank, LM, Feldbrugge, M, Wierckx, N and Schipper, K (2016). Activating intrinsic carbohydrate-active enzymes of the smut fungus ustilago maydis for the degradation of plant cell wall components. Appl Environ Microbiol 82(17): 5174-5185.   UstiLyse

Hemmerich, J, Rohe, P, Kleine, B, Jurischka, S, Wiechert, W, Freudl, R and Oldiges, M (2016). Use of a sec signal peptide library from bacillus subtilis for the optimization of cutinase secretion in corynebacterium glutamicum. Microbial Cell Factories 15(1): 208.   BIOExpresSPro

Hoffmann, AM, Noga, G and Hunsche, M (2016). Alternating high and low intensity of blue light affects psii photochemistry and raises the contents of carotenoids and anthocyanins in pepper leaves. Plant Growth Regulation 79(3): 275-285.   InducTomE 

Kosciow, K, Domin, C, Schweiger, P and Deppenmeier, U (2016). Extracellular targeting of an active endoxylanase by a tolb negative mutant of gluconobacter oxydans. J Ind Microbiol Biotechnol 43(7): 989-999.   GLUFACT

Lenders, MH, Beer, T, Smits, SH and Schmitt, L (2016). In vivo quantification of the secretion rates of the hemolysin a type i secretion system. Sci Rep 6: 33275.   BioBreak

Li, Z, Omranian, N, Neumetzler, L, Wang, T, Herter, T, Usadel, B, Demura, T, Giavalisco, P, Nikoloski, Z and Persson, S (2016). A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiol 172(2): 1334-1351.   OrCaCel 

Lotz, J, Schwalbach, M and Naumann, U (2016). A case study in adjoint sensitivity analysis of parameter calibration. Procedia Computer Science 80: 201-211.   BEProMod 

MacKellar, D, Lieber, L, Norman, JS, Bolger, A, Tobin, C, Murray, JW, Oksaksin, M, Chang, RL, Ford, TJ, Nguyen, PQ, Woodward, J, Permingeat, HR, Joshi, NS, Silver, PA, Usadel, B, Rutherford, AW, Friesen, ML and Prell, J (2016). Streptomyces thermoautotrophicus does not fix nitrogen. Scientific Reports 6: 20086.   BIOExpresSPro

Nguyen, GT, Erlenkamp, G, Jack, O, Kuberl, A, Bott, M, Fiorani, F, Gohlke, H and Groth, G (2016). Chalcone-based selective inhibitors of a c4 plant key enzyme as novel potential herbicides. Sci Rep 6: 27333.   C4-PSH

Safiran, N, Lotz, J and Naumann, U (2016). Algorithmic differentiation of numerical methods: Second-order adjoint solvers for parameterized systems of nonlinear equations. Procedia Computer Science 80: 2231-2235.   BEProMod

Sarkari, P, Feldbrügge, M and Schipper, K (2016). The corn smut fungus ustilago maydis as an alternative expression system for biopharmaceuticals. Gene expression systems in fungi: Advancements and applications. Schmoll, M. and Dattenböck, C. Cham, Springer International Publishing: 183-200.   UstiOpt

Solovchenko, A, Verschoor, AM, Jablonowski, ND and Nedbal, L (2016). Phosphorus from wastewater to crops: An alternative path involving microalgae. Biotechnol Adv 34(5): 550-564.   AlgalFertilizer

Stock, J, Terfruchte, M and Schipper, K (2016). A reporter system to study unconventional secretion of proteins avoiding n-glycosylation in ustilago maydis. Methods Mol Biol 1459: 149-160.   UstiOpt

Voiniciuc, C, Zimmermann, E, Schmidt, MH, Gunl, M, Fu, L, North, HM and Usadel, B (2016). Extensive natural variation in arabidopsis seed mucilage structure. Front Plant Sci 7: 803.   EnZIP

Witzel, C-P and Finger, R (2016). Economic evaluation of miscanthus production – a review. Renewable and Sustainable Energy Reviews 53(C): 681-696.   MisCas

Zahid, N and Deppenmeier, U (2016). Role of mannitol dehydrogenases in osmoprotection of gluconobacter oxydans. Appl Microbiol Biotechnol 100(23): 9967-9978.   GLUFACT



Domrose, A, Klein, AS, Hage-Hulsmann, J, Thies, S, Svensson, V, Classen, T, Pietruszka, J, Jaeger, KE, Drepper, T and Loeschcke, A (2015). Efficient recombinant production of prodigiosin in pseudomonas putida. Front Microbiol 6: 972.   LIPANO

Grande, PM, Viell, J, Theyssen, N, Marquardt, W, Dominguez de Maria, P and Leitner, W (2015). Fractionation of lignocellulosic biomass using the organocat process. Green Chemistry 17(6): 3533-3539.   OrCaCel

Kiefler, I, Bringer, S and Bott, M (2015). Sdhe-dependent formation of a functional acetobacter pasteurianus succinate dehydrogenase in gluconobacter oxydans--a first step toward a complete tricarboxylic acid cycle. Appl Microbiol Biotechnol 99(21): 9147-9160.   GLUFACT

Klose, H, Gunl, M, Usadel, B, Fischer, R and Commandeur, U (2015). Cell wall modification in tobacco by differential targeting of recombinant endoglucanase from trichoderma reesei. BMC Plant Biol 15: 54.   EnZIP

Lang, V, Usadel, B and Obermeyer, G (2015). De novo sequencing and analysis of the lily pollen transcriptome: An open access data source for an orphan plant species. Plant Mol Biol 87(1-2): 69-80.   PNP-EXPRESS

Loeschcke, A and Thies, S (2015). Pseudomonas putida-a versatile host for the production of natural products. Appl Microbiol Biotechnol 99(15): 6197-6214.   LIPANO

Lotz, J, Naumann, U, Hannemann-Taḿas, R, Ploch, T and Mitsos, A (2015). Higher-order discrete adjoint ode solver in c++ for dynamic optimization. Procedia Computer Science 51: 256-265.   BEProMod

Luchterhand, B, Fischoder, T, Grimm, AR, Wewetzer, S, Wunderlich, M, Schleputz, T and Buchs, J (2015). Quantifying the sensitivity of g. Oxydans atcc 621h and dsm 3504 to osmotic stress triggered by soluble buffers. J Ind Microbiol Biotechnol 42(4): 585-600.   GLUFACT

María, PDd, Grande, PM and Leitner, W (2015). Current trends in pretreatment and fractionation of lignocellulose as reflected in industrial patent activities. Chemie Ingenieur Technik 87(12): 1686-1695.   OrCaCel

Meyer, M, Schweiger, P and Deppenmeier, U (2015). Succinic semialdehyde reductase gox1801 from gluconobacter oxydans in comparison to other succinic semialdehyde-reducing enzymes. Appl Microbiol Biotechnol 99(9): 3929-3939.   GLUFACT

Moseler, A, Aller, I, Wagner, S, Nietzel, T, Przybyla-Toscano, J, Muhlenhoff, U, Lill, R, Berndt, C, Rouhier, N, Schwarzlander, M and Meyer, AJ (2015). The mitochondrial monothiol glutaredoxin s15 is essential for iron-sulfur protein maturation in arabidopsis thaliana. Proc Natl Acad Sci U S A 112(44): 13735-13740.   CoSens

Torra, J, Burgos-Caminal, A, Endres, S, Wingen, M, Drepper, T, Gensch, T, Ruiz-Gonzalez, R and Nonell, S (2015). Singlet oxygen photosensitisation by the fluorescent protein pp2fbfp l30m, a novel derivative of pseudomonas putida flavin-binding pp2fbfp. Photochem Photobiol Sci 14(2): 280-287.   BIOExpresSPro

van Summeren-Wesenhagen, PV and Marienhagen, J (2015). Metabolic engineering of escherichia coli for the synthesis of the plant polyphenol pinosylvin. Appl Environ Microbiol 81(3): 840-849.   PNP-EXPRESS

van Summeren-Wesenhagen, PV, Voges, R, Dennig, A, Sokolowsky, S, Noack, S, Schwaneberg, U and Marienhagen, J (2015). Combinatorial optimization of synthetic operons for the microbial production of p-coumaryl alcohol with escherichia coli. Microb Cell Fact 14: 79.   PNP-EXPRESS

Voiniciuc, C, Gunl, M, Schmidt, MH and Usadel, B (2015). Highly branched xylan made by irregular xylem14 and mucilage-related21 links mucilage to arabidopsis seeds. Plant Physiol 169(4): 2481-2495.   EnZIP

Voiniciuc, C, Schmidt, MH, Berger, A, Yang, B, Ebert, B, Scheller, HV, North, HM, Usadel, B and Gunl, M (2015). Mucilage-related10 produces galactoglucomannan that maintains pectin and cellulose architecture in arabidopsis seed mucilage. Plant Physiol 169(1): 403-420.   EnZIP

Wang, H, Paulo, J, Kruijer, W, Boer, M, Jansen, H, Tikunov, Y, Usadel, B, van Heusden, S, Bovy, A and van Eeuwijk, F (2015). Genotype-phenotype modeling considering intermediate level of biological variation: A case study involving sensory traits, metabolites and qtls in ripe tomatoes. Mol Biosyst 11(11): 3101-3110.   PNP-EXPRESS



Kosciow, K, Zahid, N, Schweiger, P and Deppenmeier, U (2014). Production of a periplasmic trehalase in gluconobacter oxydans and growth on trehalose. J Biotechnol 189: 27-35.   GLUFACT

Loehrer, M, Vogel, A, Huettel, B, Reinhardt, R, Benes, V, Duplessis, S, Usadel, B and Schaffrath, U (2014). On the current status of phakopsora pachyrhizi genome sequencing. Front Plant Sci 5: 377.   GLUFACT; BIOExpresSPro

Noack, S and Wiechert, W (2014). Quantitative metabolomics: A phantom? Trends Biotechnol 32(5): 238-244.  

Paulus, JK, Forster, K and Groth, G (2014). Direct and selective small-molecule inhibition of photosynthetic pep carboxylase: New approach to combat c4 weeds in arable crops. FEBS Lett 588(12): 2101-2106.   C4-PSH

Terfruchte, M, Joehnk, B, Fajardo-Somera, R, Braus, GH, Riquelme, M, Schipper, K and Feldbrugge, M (2014). Establishing a versatile golden gate cloning system for genetic engineering in fungi. Fungal Genet Biol 62: 1-10.  

Zeiser, J, Muhlenbeck, LH, Schweiger, P and Deppenmeier, U (2014). Characterization of a periplasmic quinoprotein from sphingomonas wittichii that functions as aldehyde dehydrogenase. Appl Microbiol Biotechnol 98(5): 2067-2079.



Feldbrugge, M, Kellner, R and Schipper, K (2013). The biotechnological use and potential of plant pathogenic smut fungi. Appl Microbiol Biotechnol 97(8): 3253-3265.  

Geiser, E, Wierckx, N, Zimmermann, M and Blank, LM (2013). Identification of an endo-1,4-beta-xylanase of ustilago maydis. BMC Biotechnol 13: 59.