Research • Educate • Connect
Towards a sustainable bioeconomy

Research • Educate • Connect
Towards a sustainable bioeconomy



De, PS, Theilmann, J and Raguin, A (2024). A detailed sensitivity analysis identifies the key factors influencing the enzymatic saccharification of lignocellulosic biomass. Computational and Structural Biotechnology Journal 23: 1005-1015.   PREDIG

Gauthier, C, Lavoie, S, Kubicki, S, Piochon, M, Cloutier, M, Dagenais-Roy, M, Groleau, M-C, Pichette, A, Thies, S and Déziel, E (2024). Structural characterization of a nonionic rhamnolipid from Burkholderia lata. Carbohydrate Research 535: 108991.   DesignR/SurfIn/ResPuTra

Haase, M, David, B, Paschold, B, Classen, T, Schneider, P, Pozhydaieva, N, Gohlke, H and Pietruszka, J (2024). Application of the C3-Methyltransferase StspM1 for the Synthesis of the Natural Pyrroloindole Motif. ACS Catalysis 14(1): 227-236. 

Langletz, T, Grande, PM, Viell, J, Wolters, D, Tonn, J, Klose, H, Schriever, SG, Hoffmann, A, Jupke, A, Gries, T and Herres-Pawlis, S (2024). Toward a Greener Bioeconomy: Synthesis and Characterization of Lignin–Polylactide Copolymers. Advanced Energy and Sustainability Research 5(2): 2300187.   LignoTex

Schmitz, F, Röder, A, Hoffrogge, M, Urlacher, VB and Koschorreck, K (2024). Agar plate-based activity assay for easy and fast screening of recombinant Pichia pastoris expressing unspecific peroxygenases. Biotechnol J 19(1): e2300421.   BioDeg

Tiso, T, Demling, P, Karmainski, T, Oraby, A, Eiken, J, Liu, L, Bongartz, P, Wessling, M, Desmond, P, Schmitz, S, Weiser, S, Emde, F, Czech, H, Merz, J, Zibek, S, Blank, LM and Regestein, L (2024). Foam control in biotechnological processes—challenges and opportunities. Discover Chemical Engineering 4(1): 2.   SurfIn

Tiso, T, Welsing, G, Lipphardt, A, Sauer, DF, Chi, Z, Blank, LM and Hayen, H (2024)Proposal for a systematic naming convention for liamocins. Journal of Surfactants and Detergents n/a(n/a).   SurfIn



Abdelshafy, A, Hermann, A, Herres-Pawlis, S and Walther, G (2023). Opportunities and Challenges of Establishing a Regional Bio-based Polylactic Acid Supply Chain. Global Challenges 7(7): 2200218.   Transform2Bio/BioPlastiCycle/R2HPBIO

Bitzenhofer, NL, Classen, T, Jaeger, KE and Loeschcke, A (2023). Biotransformation Of l-Tryptophan To Produce Arcyriaflavin A With Pseudomonas putida KT2440. Chembiochem 24(23): e202300576.   CombiCom

Bitzenhofer, NL, Hilgers, F, Bosio, GN, Torra, J, Casini, G, Beinlich, FRM, Knieps-Grünhagen, E, Gordeliy, V, Jaeger, KE, Nonell, S, Krauss, U, Gensch, T and Drepper, T (2023). Development and Characterization of Flavin-Binding Fluorescent Proteins, Part II: Advanced Characterization. Methods Mol Biol 2564: 143-183.   CombiCom

Bröring, S and Thybussek, V (2023). Understanding the business model design for complex technology systems: The case of the bioeconomy. EFB Bioeconomy Journal 3: 100052.   NextVegOil

De, PS, Glass, T, Stein, M, Spitzlei, T and Raguin, A (2023). PREDIG: Web application to model and predict the enzymatic saccharification of plant cell wall. Computational and Structural Biotechnology Journal 21: 5463-5475.  PREDIG

Dittrich, J, Kolodzy, F, Töpel, A, Hofmann, A, Groth, G, Pich, A and Gohlke, H (2023). Loading and co-solvent-triggered release of okanin, a C4 plant key enzyme inhibitor, into/from functional microgels. Chemical Engineering Journal 460: 141631.   greenRelease

Dumschott, K, Dörpholz, H, Laporte, MA, Brilhaus, D, Schrader, A, Usadel, B, Neumann, S, Arnaud, E and Kranz, A (2023). Ontologies for increasing the FAIRness of plant research data. Front Plant Sci 14: 1279694. 

Filbig, M, Kubicki, S, Bator, I, Hausmann, R, Blank, LM, Henkel, M, Thies, S and Tiso, T (2023). Chapter 8 - Metabolic and process engineering on the edge—Rhamnolipids are a true challenge: A review. Biosurfactants. Soberón-Chávez, G., Academic Press: 157-181.   Bio²/DesignR/SurfIn

Gebauer, J, Pietruszka, J and Classen, T (2023). Expression and characterization of PrnC—a flavin-dependent halogenase from the pyrrolnitrin biosynthetic pathway of Pseudomonas protegens Pf-5. Frontiers in Catalysis 3.   HaloEnz

Gui, S, Martinez-Rivas, FJ, Wen, W, Meng, M, Yan, J, Usadel, B and Fernie, AR (2023). Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant Journal 113(3): 446-459. 

Halle, L, Hollmann, N, Tenhaef, N, Mbengi, L, Glitz, C, Wiechert, W, Polen, T, Baumgart, M, Bott, M and Noack, S (2023). Robotic workflows for automated long-term adaptive laboratory evolution: improving ethanol utilization by Corynebacterium glutamicum. Microbial Cell Factories 22(1): 175. 

Heucken, N, Tang, K, Hüsemann, L, Heßler, N, Müntjes, K, Feldbrügge, M, Göhre, V and Zurbriggen, MD (2023). Engineering and Implementation of Synthetic Molecular Tools in the Basidiomycete Fungus Ustilago maydis. Journal of Fungi 9(4): 480.   CombiCom

Jafari, Y., Engemann, H., Heckelei, T., Hainsch, K. (2023). National and Regional Economic Impact of Changes in the Electricity Mix in Germany: A Dynamic Analysis up to 2050. Utilities Policy 82: 101583.  Transform2Bio

Jafari, Y., Linmei S., Kuhn, A., Heckelei, T. (2023). The national and regional impact of the EU bioeconomy strategies on the agri-food sector: Insights from Germany. German Journal of Agricultural Economics 72(2):73-90.  Transform2Bio

Klose, H and Paës, G (2023). Editorial: Understanding plant cell wall recalcitrance for efficient lignocellulose processing. Frontiers in Plant Science 14.   PREDIG

Kossmann, DF, Huang, M, Weihmann, R, Xiao, X, Gätgens, F, Weber, TM, Brass, HUC, Bitzenhofer, NL, Ibrahim, S, Bangert, K, Rehling, L, Mueller, C, Tiso, T, Blank, LM, Drepper, T, Jaeger, K-E, Grundler, FMW, Pietruszka, J, Schleker, ASS and Loeschcke, A (2023). Production of tailored hydroxylated prodiginine showing combinatorial activity with rhamnolipids against plant-parasitic nematodes. Frontiers in Microbiology 14.   SurfIn/TaiLead/CombiCom

Lippi, N, Senger, E, Karhu, S, Mezzetti, B, Cianciabella, M, Denoyes, B, Sönmez, DA, Fidelis, M, Gatti, E, Höfer, M, Kafkas, NE, Mazzoni, L, McCallum, S, Olbricht, K, Orsucci, S, Osorio, S, Pinczinger, D, Predieri, S, Rokka, S, Sánchez-Sevilla, JF, Savini, G, Soria, C, Usadel, B, Zucchi, P and Chiara, M (2023) "Development and Validation of a Multilingual Lexicon as a Key Tool for the Sensory Analyses and Consumer Tests of Blueberry and Raspberry Fruit." Agriculture 13 DOI: 10.3390/agriculture13020314.

Macht, J, Klink-Lehmann, J and Hartmann, M (2023). Don't forget the locals: Understanding citizens' acceptance of bio-based technologies. Technology in Society 74: 102318.   Transform2Bio

Macht, J, Klink-Lehmann, J and Venghaus, S (2023). Eco-friendly alternatives to food packed in plastics: German consumers’ purchase intentions for different bio-based packaging strategies. Food Quality and Preference 109: 104884.   Transform2Bio

Martinez Diaz, J, Grande, PM and Klose, H (2023). Small-scale OrganoCat processing to screen rapeseed straw for efficient lignocellulose fractionation. Frontiers in Chemical Engineering 5.   PREDIG

Reifsteck, RA, Zhai, S, Gausmann, M, Ballerstedt, H, Tiso, T, Blank, LM and Jupke, A (2023). Techno-Economic Comparison of Bio-Cycling Processes for Mixed Plastic Waste Valorization. Chemie Ingenieur Technik 95(8): 1247-1258.   SurfIn

Schmitz, C, Luedeling, E and Pariyar, S (2023). Synergism and phytotoxicity: The effects of tank-mix additives on the biological efficacy of Cu2+ against Venturia inaequalis and Podosphaera leucotricha. Annals of Applied Biology 182(3): 331-342.

Schmitz, F, Koschorreck, K, Hollmann, F and Urlacher, VB (2023). Aromatic hydroxylation of substituted benzenes by an unspecific peroxygenase from Aspergillus brasiliensis. Reaction Chemistry & Engineering 8(9): 2177-2186.   Lignin2Value

Schonhoff, A., Stöckigt, G., Wulf, C., Zapp, P., Kuckshinrichs, W. (2023). Biosurfactants production with substrates from the sugar industry - environmental, cost, market and social aspects. RSC Sustainability, doi 10.1039/D3SU00122A.  Bio2

Schrey, SD, Martinez Diaz, J, Becker, L, Mademann, JA, Ohrem, B, Drobietz, D, Chaloupsky, P, Jablonowski, ND, Wever, C, Grande, PM, Pestsova, E and Klose, H (2023). Cell wall composition and biomass saccharification potential of Sida hermaphrodita differ between genetically distant accessions. Frontiers in Plant Science 14.   AP³

Sundermeyer, L, Folkerts, J-G, Lückel, B, Mack, C, Baumgart, M and Bott, M (2023). Cellular localization of the hybrid pyruvate/2-oxoglutarate dehydrogenase complex in the actinobacterium Corynebacterium glutamicum. Microbiology Spectrum 11(5): e02668-02623. 

Tenhaef, N, Hermann, A, Müller, MF, Görtz, J, Marienhagen, J, Oldiges, M, Wiechert, W, Bott, M, Jupke, A, Hartmann, L, Herres-Pawlis, S and Noack, S (2023). From Microbial Succinic Acid Production to Polybutylene Bio-Succinate Synthesis Chemie Ingenieur Technik 95(4): 587-595.   HyImPAct/R2HPBio/BioPlastiCycle

Wang, S, Robertz, S, Seven, M, Kraemer, F, Kuhn, BM, Liu, L, Lunde, C, Pauly, M and Ramírez, V (2023). A large-scale forward genetic screen for maize mutants with altered lignocellulosic properties. Front Plant Sci 14: 1099009.   NextVegOil

Waßenhoven, A., Rennings, M., Laibach, N., Bröring, S. (2023). What constitutes a “Key Enabling Technology” for transition processes: Insights from the bioeconomy's technological landscape. Technological Forecasting and Social Change, Volume 197, December 2023, 122873. 10.1016/j.techfore.2023.122873. Transform2Bio

Weil, HL, Schneider, K, Tschöpe, M, Bauer, J, Maus, O, Frey, K, Brilhaus, D, Martins Rodrigues, C, Doniparthi, G, Wetzels, F, Lukasczyk, J, Kranz, A, Grüning, B, Zimmer, D, Deßloch, S, von Suchodoletz, D, Usadel, B, Garth, C and Mühlhaus, T (2023). PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. The Plant Journal 116(4): 974-988. 

Xiao-Ran, Z, Sebastian, B, Dominik, B, Cristina Martins, R, Timo, M, Dirk von, S, Richard, MT, Bjoern, U and Angela, K (2023). DataPLAN: a web-based data management plan generator for the plant sciences. bioRxiv: 2023.2007.2007.548147. 

Ziegler, AL, Grütering, C, Poduschnick, L, Mitsos, A and Blank, LM (2023). Co-feeding enhances the yield of methyl ketones. J Ind Microbiol Biotechnol 50(1).   MK-ScaLoop




Publications from previous years

Brehl, C, Brass, HUC, Lüchtrath, C, Böckmann, L, Ihling, N, Classen, T, Pietruszka, J and Büchs, J (2022). Optimized prodigiosin production with Pseudomonas putida KT2440 using parallelized noninvasive online monitoring. Biotechnol Prog 38(3): e3245.   CombiCom

Dallendörfer, M, Dieken, S, Henseleit, M, Siekmann, F and Venghaus, S (2022). Investigating citizens’ perceptions of the bioeconomy in Germany – High support but little understanding. Sustainable Production and Consumption 30: 16-30.   Transform2Bio

Dittrich, J, Brethauer, C, Goncharenko, L, Bührmann, J, Zeisler-Diehl, V, Pariyar, S, Jakob, F, Kurkina, T, Schreiber, L, Schwaneberg, U and Gohlke, H (2022). Rational Design Yields Molecular Insights on Leaf-Binding of Anchor Peptides. ACS Applied Materials & Interfaces 14(25): 28412-28426.   greenRelease

Doeker, M, Grabowski, L, Rother, D and Jupke, A (2022). In situ reactive extraction with oleic acid for process intensification in amine transaminase catalyzed reactions. Green Chemistry 24(1): 295-304.  

Dürr, J and Sili, M (2022). New or Traditional Approaches in Argentina’s Bioeconomy? Biomass and Biotechnology Use, Local Embeddedness, and Sustainability Outcomes of Bioeconomic Ventures. Sustainability 14(21): 14491.   Transform2Bio

Hermann, A, Becker, T, Schäfer, MA, Hoffmann, A and Herres-Pawlis, S (2022). Effective Ligand Design: Zinc Complexes with Guanidine Hydroquinoline Ligands for Fast Lactide Polymerization and Chemical Recycling. ChemSusChem 15(18): e202201075.   R2HPBio

Hilgers, F, Hogenkamp, F, Klaus, O, Kruse, L, Loeschcke, A, Bier, C, Binder, D, Jaeger, K-E, Pietruszka, J and Drepper, T (2022). Light-mediated control of gene expression in the anoxygenic phototrophic bacterium Rhodobacter capsulatus using photocaged inducers. Frontiers in Bioengineering and Biotechnology 10.   CombiCom

Hogenkamp, F, Hilgers, F, Bitzenhofer, NL, Ophoven, V, Haase, M, Bier, C, Binder, D, Jaeger, K-E, Drepper, T and Pietruszka, J (2022). Optochemical Control of Bacterial Gene Expression: Novel Photocaged Compounds for Different Promoter Systems. ChemBioChem 23(1): e202100467.   CombiCom

Jankowski, N, Koschorreck, K and Urlacher, VB (2022). Aryl-Alcohol-Oxidase-Mediated Synthesis of Piperonal and Other Valuable Aldehydes. Advanced Synthesis & Catalysis 364(14): 2364-2372.  

Johann, S, Weichert, FG, Schröer, L, Stratemann, L, Kämpfer, C, Seiler, T-B, Heger, S, Töpel, A, Sassmann, T, Pich, A, Jakob, F, Schwaneberg, U, Stoffels, P, Philipp, M, Terfrüchte, M, Loeschcke, A, Schipper, K, Feldbrügge, M, Ihling, N, Büchs, J, Bator, I, Tiso, T, Blank, LM, Roß-Nickoll, M and Hollert, H (2022). A plea for the integration of Green Toxicology in sustainable bioeconomy strategies – Biosurfactants and microgel-based pesticide release systems as examples. Journal of Hazardous Materials 426: 127800.   CombiCom/TaiLead

Klaus, O, Hilgers, F, Nakielski, A, Hasenklever, D, Jaeger, K-E, Axmann, IM and Drepper, T (2022). Engineering phototrophic bacteria for the production of terpenoids. Current Opinion in Biotechnology 77: 102764.   CombiCom

Koschorreck, K, Alpdagtas, S and Urlacher, VB (2022). Copper-radical oxidases: A diverse group of biocatalysts with distinct properties and a broad range of biotechnological applications. Engineering Microbiology 2(3): 100037.  

Kuhn, T, Möhring, N, Töpel, A, Jakob, F, Britz, W, Bröring, S, Pich, A, Schwaneberg, U and Rennings, M (2022). Using a bio-economic farm model to evaluate the economic potential and pesticide load reduction of the greenRelease technology. Agricultural Systems 201: 103454.   Transform2Bio/ greenRelease

Labib, M, Grabowski, L, Brüsseler, C, Kallscheuer, N, Wachtendonk, L, Fuchs, T, Jupke, A, Wiechert, W, Marienhagen, J, Rother, D and Noack, S (2022). Toward the Sustainable Production of the Active Pharmaceutical Ingredient Metaraminol. ACS Sustainable Chemistry & Engineering 10(16): 5117-5128.   HyImPAct

Leipnitz, M, Scholl, N, Biselli, A and Jupke, A (2022). Influences of the constraints of a separation task on the optimal selection of a cation exchanger resin. Food and Bioproducts Processing 135: 97-113.   AP3

Macht, J, Klink-Lehmann, JL and Simons, J (2022). German citizens’ perception of the transition towards a sustainable bioeconomy: A glimpse into the Rheinische Revier. Sustainable Production and Consumption 31: 175-189.   Transform2Bio

Massfeller, A, Meraner, M, Hüttel, S and Uehleke, R (2022). Farmers' acceptance of results-based agri-environmental schemes: A German perspective. Land Use Policy 120: 106281.   Transform2Bio

Porta, N, Fejzagić, AV, Dumschott, K, Paschold, B, Usadel, B, Pietruszka, J, Classen, T and Gohlke, H (2022). Identification and Characterization of the Haloperoxidase VPO-RR from Rhodoplanes roseus by Genome Mining and Structure-Based Catalytic Site Mapping. Catalysts 12(10): 1195.   HaloEnz

Powell, AF, Feder, A, Li, J, Schmidt, MH-W, Courtney, L, Alseekh, S, Jobson, EM, Vogel, A, Xu, Y, Lyon, D, Dumschott, K, McHale, M, Sulpice, R, Bao, K, Lal, R, Duhan, A, Hallab, A, Denton, AK, Bolger, ME, Fernie, AR, Hind, SR, Mueller, LA, Martin, GB, Fei, Z, Martin, C, Giovannoni, JJ, Strickler, SR and Usadel, B (2022). A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant Journal 110(6): 1791-1810.  

Ramp, P, Pfleger, C, Dittrich, J, Mack, C, Gohlke, H and Bott, M (2022). Physiological, Biochemical, and Structural Bioinformatic Analysis of the Multiple Inositol Dehydrogenases from Corynebacterium glutamicum. Microbiol Spectr 10(5): e0195022.   InoDH

Schonhoff, A, Ihling, N, Schreiber, A and Zapp, P (2022). Environmental Impacts of Biosurfactant Production Based on Substrates from the Sugar Industry. ACS Sustainable Chemistry & Engineering 10(29): 9345-9358.   Bio2

Schrinner, S, Serra Mari, R, Finkers, R, Arens, P, Usadel, B, Marschall, T and Klau, GW (2022). Genetic polyploid phasing from low-depth progeny samples. iScience 25(6): 104461.  

Senger, E, Osorio, S, Olbricht, K, Shaw, P, Denoyes, B, Davik, J, Predieri, S, Karhu, S, Raubach, S, Lippi, N, Höfer, M, Cockerton, H, Pradal, C, Kafkas, E, Litthauer, S, Amaya, I, Usadel, B and Mezzetti, B (2022). Towards smart and sustainable development of modern berry cultivars in Europe. The Plant Journal 111(5): 1238-1251.  

Serra Mari, R, Schrinner, S, Finkers, R, Arens, P, Schmidt, M, H. W., Usadel, B, Klau, GW and Marschall, T (2022). Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. bioRxiv: 2022.2005.2010.491293.  

Stark, S, Biber-Freudenberger, L, Dietz, T, Escobar, N, Förster, JJ, Henderson, J, Laibach, N and Börner, J (2022). Sustainability implications of transformation pathways for the bioeconomy. Sustainable Production and Consumption 29: 215-227.  

Sundermeyer, L, Bosco, G, Gujar, S, Brocker, M, Baumgart, M, Willbold, D, Weiergräber, OH, Bellinzoni, M and Bott, M (2022). Characteristics of the GlnH and GlnX Signal Transduction Proteins Controlling PknG-Mediated Phosphorylation of OdhI and 2-Oxoglutarate Dehydrogenase Activity in Corynebacterium glutamicum. Microbiology Spectrum 10(6): e02677-02622.  

Weihmann, R, Kubicki, S, Bitzenhofer, NL, Domröse, A, Bator, I, Kirschen, L-M, Kofler, F, Funk, A, Tiso, T, Blank, LM, Jaeger, K-E, Drepper, T, Thies, S and Loeschcke, A (2022). The modular pYT vector series employed for chromosomal gene integration and expression to produce carbazoles and glycolipids in P. putida. FEMS Microbes 4.   CombiCom/Bio2/Viola

Bongartz, P., I. Bator, K. Baitalow, R. Keller, T. Tiso, L. M. Blank and M. Wessling (2021). A scalable bubble-free membrane aerator for biosurfactant production. Biotechnology and Bioengineering, 114Bio2

Brands S., Sikkens J.G., Davari M.D., Brass H.U.C., Klein A.S., Pietruszka J., Ruff A.J. and Schwaneberg U. (2021). Understanding substrate binding and the role of gatekeeping residues in PigC access tunnels. Chem. Commun., 57, 2681-2684. CombiCom

Brands S., Brass H.U.C., Klein A.S., Sikkens J.G., Davari M.D., Pietruszka J., Ruff A.J. and Schwaneberg U. (2021). KnowVolution of prodigiosin ligase PigC towards condensation of short-chain prodiginines. Catal. Sci. Technol., 11, 2805–2815. CombiCom

Dieken M., Dallendörfer M., Henseleit M., Siekmann F., Venghaus S. (2021). The multitudes of bioeconomies: A systematic review of stakeholders’ bioeconomy perceptions. Sustainable Production and Consumption, 27, 1703-1717. Transform2Bio

Doeker, M., V. Hüttche and A. Jupke (2021). "Reactive extraction for the recovery of primary amines from aqueous streams." Separation and Purification Technology: 118229. HyImPact

Doeker M., L. Grabowski, D. Rother, A. Jupke (2021). "In situ reactive extraction with oleic acid for process intensification in amine transaminase catalyzed reactions." Green Chemistry 24(1): 295-304. HyImPact

Ellis, L. D., N. A. Rorrer, K. P. Sullivan, M. Otto, J. E. McGeehan, Y. Román-Leshkov, N. Wierckx and G. T. Beckham (2021). Chemical and biological catalysis for plastics recycling and upcycling. Nat Catal 4, 539–556. PlastiCycle

Fort A., M. McHale, K. Cascella, P. Potin, B. Usadel, M.D. Guiry and R. Sulpice (2021). "Foliose Ulva Species Show Considerable Inter-Specific Genetic Diversity, Low Intra-Specific Genetic Variation, and the Rare Occurrence of Inter-Specific Hybrids in the Wild."  57(1): 219-233. HaloEnz

Genzel F., Dicke M. D., Junker-Frohn L. V., Neuwohner A., Thile B., Putz A., Usadel B., Wormit A., Wiese-Klinkenberg A. (2021). "Impact of Moderate Cold and Salt Stress on the Accumulation of Antioxidant Flavonoids in the Leaves of Two Capsicum Cultivars." Journal of Agricultural and Food Chemistry 69(23): 6431-6443.
Hage-Hülsmann J., Klaus O., Linke K., Troost K., Gora L., Hilger F., Wirtz A., Santiago-Schübel B., Loeschcke A., Jaeger K.-E., Drepper T.  (2021). "Production of C20, C30 and C40 terpenes in the engineered phototrophic bacterium Rhodobacter capsulatus." J Biotechnol 338: 20-30. CombiCom

Hilgers F., Habash S.S., Loeschcke A., Akcermann Y.S., Neumann S., Heck A., Klaus O., Hage-Hülsmann J., Grundler F.M.W., Jaeger K.-E., Schleker A.S.S., Drepper T. (2021). "Heterologous Production of β-Caryophyllene and Evaluation of Its Activity against Plant Pathogenic Fungi." Microorganisms 9(1). CombiCom

Hogenkamp, F., F. Hilgers, A. Knapp, O. Klaus, C. Bier, D. Binder, K.-E. Jaeger, T. Drepper and J. Pietruszka (2021). "Effect of Photocaged Isopropyl β-d-1-thiogalactopyranoside Solubility on the Light Responsiveness of LacI-controlled Expression Systems in Different Bacteria." Chembiochem : a European journal of chemical biology 22(3): 539-547. CombiCom

Höller, M., A. Lunze, C. Wever, A. L. Deutschle, A. Stücker, N. Frase, E. Pestsova, A. C. Spiess, P. Westhoff and R. Pude (2021). "Meadow hay, Sida hermaphrodita (L.) Rusby and Silphium perfoliatum L. as potential non-wood raw materials for the pulp and paper industry." Industrial Crops and Products 167: 113548. Spread

Holtz, A., J. Görtz, C. Kocks, M. Junker and A. Jupke (2021). "Automated measurement of pH-dependent solid-liquid equilibria of itaconic acid and protocatechuic acid." Fluid Phase Equilibria 532: 112893. R2HPBio

Jablonowski N.D., M. Pauly, M. Dama M. (2021). "Microwave Assisted Pretreatment of Szarvasi (Agropyron elongatum) Biomass to Enhance Enzymatic Saccharification and Direct Glucose Production." Front Plant Sci 12: 767254. HyImPact

Jablonowski N.D., Shrey S.D. (2021). Bioenergy Corps: Current Status and Future Prospects. Agronomy, 11, 316.

Jankowski N., Urlacher V.B., Koschorreck K. (2021). Two adjacent C-terminal mutations enable expression of aryl-alcohol oxidase from Pleurotus eryngii in Pichia pastoris. Appl Microbiol Biotechnol 105(20): 7743-7755.

Klein A.S., Albrecht A.C., Pietruszka J. (2021). Chemoenzymatic One-Pot Process for the Synthesis of Tetrahydroisoquinolines. Chemoenzymatic One-Pot Process for the Synthesis of Tetrahydroisoquinolines. Catalysts. 2021; 11(11):1389.

Labib, M., J. Görtz, C. Brüsseler, N. Kallscheuer, J. Gätgens, A. Jupke, J. Marienhagen and S. Noack (2021). "Metabolic and Process Engineering for Microbial Production of Protocatechuate from Xylose with Corynebacterium glutamicum." bioRxiv: 2021.2002.2012.430943. HyImPact

Lappe A., Jankowski N., Albrecht A., Koschorreck K. (2021). Characterization of a thermotolerant aryl-alcohol oxidase from Moesziomyces antarcticus oxidizing 5-hydroxymethyl-2-furancarboxylic acid. Appl Microbiol Biotechnol 105(21-22): 8313-8327.

Lenz P., Hilger F., Burmeister Al. Zimmermann L., Volkenborn K., Grünberger A., Kohlheyer D., Drepper T., Jaeger K.-E., Knapp A. (2021). "The iSplit GFP assay detects intracellular recombinant proteins in Bacillus subtilis." Microbial Cell Factories 20(1): 174. BioBreak

Loogen J., A. Müller, A. Balzer, K. Schmitz, R. Krug, U. Schaffrath, J. Pietruszk, U. Conrath, J. Büchs (2021). "An illuminated respiratory activity monitoring system identifies priming-active compounds in plant seedlings." BMC Plant Biol 21(1): 324. PrimACs

Lunze A., B. Heyman, Y. Chammakhi, M. Eichhorn, J. Büchs, N. Anders, A.C. Spiess (2021). "Investigation of Silphium perfoliatum as Feedstock for a Liquid Hot Water–Based Biorefinery Process Towards 2,3-Butanediol." BioEnergy Research 14(3): 799-814.

Mack, K., Doeker, M., Grabowski, L., Jupke, A. and Rother, D. (2021). Extractive in situ product removal for the application of naturally produced L-alanine as an amine donor in enzymatic metaraminol production. Green Chem., 23, 4892. HyImPact

Pahmeyer, Christoph; Schäfer, David; Kuhn, Till; Britz, Wolfgang (2021). Data on a synthetic farm population of the German federal state of North Rhine-Westphalia. Data in Brief 36. Transform2Bio

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Weidener, D., W. Leitner, P. Domínguez de María, H. Klose and P. M. Grande  (2021). "Lignocellulose Fractionation Using Recyclable Phosphoric Acid: Lignin, Cellulose, and Furfural Production."  ChemSusChem 14(3): 909-916. AP3

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Bator, I., A. Wittgens, F. Rosenau, T. Tiso and L. M. Blank (2020): Comparison of three xylose pathways in Pseudomonas putida KT2440 for the synthesis of valuable products. Front. Bioeng. Biotechnol. 7: 1-18. Bio2

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Blesken, C. C., I. Bator, C. Eberlein, H. J. Heipieper, T. Tiso and L. M. Blank (2020): Genetic cell-surface modification for optimized foam fractionation. Frontiers in Bioengineering and Biotechnology 8 Bio2

Butkowski, O. K., C. M. Baum, A. Pakseresht, S. Bröring and C. J. Lagerkvist (2020). Examining the social acceptance of genetically modified bioenergy in Germany: Labels, information valence, corporate actors, and consumer decisions. Energy Research & Social Science 60:101308. doi: 10.1016/j.erss.2019.101308 CombiCom

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Holtz, A., D. Weidener, W. Leitner, H. Klose, P. M. Grande and A. Jupke (2020). Process development for separation of lignin from OrganoCat lignocellulose fractionation using antisolvoent precipation. Separation and Purification Technology 236: 116295 AP3

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Jurischka, S., A. Bida, D. Dohmen-Olma, B. Kleine, J. Potzkei, S. Binder, G. Schaumann, P. J. Bakkes and R. Freudl (2020). "A secretion biosensor for monitoring Sec-dependent protein export in Corynebacterium glutamicum." Microbial Cell Factories 19(1): 11.
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Kubicki, S., I. Bator, S. Jankowski, K. Schipper, T. Tiso, M. Feldbrügge, L. M. Blank, S. Thies and K.-E. Jaeger (2020): A Straightforward Assay for Screening and Quantification of Biosurfactants in Microbial Culture Supernatants. Frontiers in Bioengineering and Biotechnology 8:958 Bio2

Lamm, R., V. D. Jäger, B. Heyman, C. Berg, C. Cürten, U. Krauss, K.-E. Jaeger and J. Büchs (2020). "Detailed small-scale characterization and scale-up of active YFP inclusion body production with Escherichia coli induced by a tetrameric coiled coil domain." Journal of Bioscience and Bioengineering 129(6): 730-740. CatBIs

Lee, J., F. Hilgers, A. Loeschke, K.-E. Jaeger and M. Feldbrügge (2020). Ustilago maydis serves as a novel production host for the synthesis of plant and fungal sesquiterpenoids. Front. Microbiol., 11, 1655CombiCom

Lee, J., Y.-M. Shi, P. Grün, M. Gube, M. Feldbrügge, H. Bode and F. Hennicke (2020). "Identification of Feldin, an Antifungal Polyyne from the Beefsteak Fungus Fistulina hepatica."  10(11): 1502.CombiCom

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Milke, L. and J. Marienhagen (2020). "Engineering intracellular malonyl-CoA availability in microbial hosts and its impact on polyketide and fatty acid synthesis." Appl Microbiol Biotechnol 104(14): 6057-6065. HyImPact

Milke, L., M. Mutz and J. Marienhagen (2020). "Synthesis of the character impact compound raspberry ketone and additional flavoring phenylbutanoids of biotechnological interest with Corynebacterium glutamicum." Microbial Cell Factories 19(1): 92. HyImPact

Molitor, R., A. Bollinger, S. Kubicki, A. Loeschcke, K. E. Jaeger and S. Thies (2020). "Agar plate-based screening methods for the identification of polyester hydrolysis by Pseudomonas species." Microb Biotechnol 13(1): 274-284.Bio2

Müntjes, K., M. Philipp, L. Hüsemann, N. Heucken, S. Weidtkamp-Peters, K. Schipper, M. D. Zurbriggen and M. Feldbrügge (2020): Establishing Polycistronic gene expression in the model microorganism Ustilago maydis. Frontiers in Microbiology 11:1384 Bio2 CombiCom

Pan, F., D. H. El-Kashef, R. Kalscheuer, W. E. G. Müller, J. Lee, M. Feldbrügge, A. Mándi, T. Kurtán, Z. Liu, W. Wu and P. Proksch (2020). Cladosins L-O, new hybrid polyketides from the endophytic fungus Cladosporium sphaerospermum WBS017. Eur. J. Med. Chem. 191: 113159.CombiCom

Reindl, M., J. Stock, K. P. Hussnaetter, A. Genc, A. Brachmann and K. Schipper (2020). "A Novel Factor Essential for Unconventional Secretion of Chitinase Cts1."  11(1529). UstiOpt

Stoffels, P., M. J. Müller, S. Stachurski, M. Terfrüchte, S. Schröder, N. Ihling, N. Wierckx, M. Feldbrügge, K. Schipper and J. Büchs (2020). Complementing the intrinsic repertoire of Ustilago maydis for degradation of the pectin backbone polygalacturonic acid, Journal of Biotechnology, Volume 307, 2020, 148-163 Bio2 PectiLyse

Tiso, T., N. Ihling, S. Kubicki, A. Biselli, A. Schonhoff, I. Bator, S. Thies, T. Karmainski, S. Kruth, A.-L. Willenbrink, A. Loeschcke, P. Zapp, A. Jupke, K.-E. Jaeger, J. Büchs and L. M. Blank (2020): Integration of Genetic and Process Engineering for Optimized Rhamnolipid Production Using Pseudomonas putida. Frontiers in Bioengineering and Biotechnology 8: 976. Bio2

Tiso, T., D. F. Sauer, K. Beckerle, C. C. Blesken, J. Okuda and L. M. Blank (2020). "A Combined Bio-Chemical Synthesis Route for 1-Octene Sheds Light on Rhamnolipid Structure."  10(8): 874.Bio2

Volkenborn, K., L. Kuschmierz, N. Benz, P. Lenz, A. Knapp and K.-E. Jaeger (2020). "The length of ribosomal binding site spacer sequence controls the production yield for intracellular and secreted proteins by Bacillus subtilis." Microbial Cell Factories 19(1): 154. GlycoHype
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Weidener, D., M. Dama, S. K. Dietrich, B. Ohrem, M. Pauly, W. Leitner, P. Domínguez de María, P. M. Grande and H. Klose (2020) Multiscale analysis of lignocellulose recalcitrance towards OrganoCat pretreatment and fractionation. Biotechnology for Biofuels 13: 155 AP3

Weidener, D., A. Holtz, H. Klose, A. Jupke, W. Leitner and P. M. Grande (2020) Lignin Precipitation and Fractionation from OrganoCat Pulping to Obtain Lignin with Different Sizes and Chemical Composition. Molecules 25: 3330 AP3

Weihmann, R., A. Domröse, T. Drepper, K.-E. Jaeger and A. Loeschcke (2020). Protocols for yTREX/Tn5-based gene cluster expression in Pseudomonas putida. Microb Biotechnol. 13(1):250-262.  CombiCom

Widzgowski, J., A. Vogel, L. Altrogge, J. Pfaff, H. Schoof, B. Usadel, L. Nedbal, U. Schurr and C. Pfaff (2020). "High light induces species specific changes in the membrane lipid composition of Chlorella." Biochem J 477(13): 2543-2559.

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Zhao, X., T. Ploch, S. Noack, W. Wiechert, A. Mitsos and E. von Lieres (2020). "Analysis of the local well-posedness of optimization-constrained differential equations by local optimality conditions."  66(10): e16548.

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Belouah, I., C. Bénard, A. Denton, M. Blein-Nicolas, T. Balliau, E. Teyssier, P. Gallusci, O. Bouchez, B. Usadel, M. Zivy, Y. Gibon and S. Colombié (2019). "Transcriptomic and proteomic data in developing tomato fruit." Data in brief 28: 105015-105015

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Bolger, A. M., H. Poorter, K. Dumschott, M. E. Bolger, D. Arend, S. Osorio, H. Gundlach, K. F. X. Mayer, M. Lange, U. Scholz and B. Usadel (2019). "Computational aspects underlying genome to phenome analysis in plants

Brass, H. U. C., A. S. Klein, S. Nyholt, T. Classen and J. Pietruszka (2019). "Condensing Enzymes from Pseudoalteromonadaceae for Prodiginine Synthesis." 361(11): 2659-2667 CombiCom

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Bruckner, M., R. Wood, D. Moran, N. Kuschnig, H. Wieland, V. Maus and J. Börner (2019). "FABIO—The Construction of the Food and Agriculture Biomass Input–Output Model

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Carvalho Lemos, V. (2019). "Color for Life: Biosynthesis and Distribution of Phenolic Compounds in Pepper (<i>Capsicum annuum</i>)." Agriculture v. 9(no. 4): 2019 v.2019 no.2014

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Courville, K. J., L. Frantzeskakis, S. Gul, N. Haeger, R. Kellner, N. Heßler, B. Day, B. Usadel, Y. K. Gupta, H. P. van Esse, A. Brachmann, E. Kemen, M. Feldbrügge and V. Göhre (2019). "Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors." New Phytologist. PlaMint

Domröse, A., J. Hage-Hülsmann, S. Thies, R. Weihmann, L. Kruse, M. Otto, N. Wierckx, K.-E. Jaeger, T. Drepper and A. Loeschcke (2019) Pseudomonas putida rDNA is a favored site for the expression of biosynthetic genes. Sci Rep 9, 7028 DOI: 10.1038/s41598-019-43405-1 CombiCom, Bio2

Fejzagić, A. V., J. Gebauer, N. Huwa and T. Classen (2019) Halogenating Enzymes for Active Agent Synthesis: First Steps Are Done and Many Have to Follow. Molecules 24(21):4008. doi: 10.3390/molecules24214008 CombiCom

Grande, P. M., D. Weidener, S. Dietrich, M. Dama, M. Bellof, R. Maas, M. Pauly, W. Leitner, H. Klose and P. Domínguez de María (2019). "OrganoCat Fractionation of Empty Fruit Bunches from Palm Trees into Lignin, Sugars, and Cellulose-Enriched Pulp." ACS Omega 4(11): 14451-14457 AP3

Hage-Hülsmann, J., S. Metzger, V. Wewer, F. Buechel, K. Troost, S. Thies, A. Loeschcke, K.-E. Jaeger and T. Drepper (2019). Biosynthesis of cycloartenol by expression of plant and bacterial oxidosqualene cyclases in engineered Rhodobacter capsulatus. J Biotechnol X, 4: 100014.

Harwoko, H., G. Daletos, F. Stuhldreier, J. Lee, S. Wesselborg, M. Feldbrügge, W. E. G. Müller, R. Kalscheuer, E. Ancheeva and P. Proksch (2019). "Dithiodiketopiperazine derivatives from endophytic fungi Trichoderma harzianum and Epicoccum nigrum." Natural Product Research: 1-9 CombiCom

Hemmerich, J., M. Moch, S. Jurischka, W. Wiechert, R. Freudl and M. Oldiges (2019). "Combinatorial impact of Sec signal peptides from Bacillus subtilis and bioprocess conditions on heterologous cutinase secretion by Corynebacterium glutamicum." Biotechnol Bioeng 116(3): 644-655. BIOExpresSPro

Hilgers, F., N. L. Bitzenhofer, Y. Ackermann, A. Burmeister, A. Grünberger, K.-E. Jaeger and T. Drepper (2019). "Genetically Encoded Photosensitizers as Light-Triggered Antimicrobial Agents." Int J Mol Sci 20(18): 4608 CombiCom

Ihling, N., A. Uhde, R. Scholz, C. Schwarz, L. Schmitt and J. Büchs (2019). "Scale-up of a Type I secretion system in E. coli using a defined mineral medium." n/a(n/a): e2911

Jäger, V. D., R. Kloss, A. Grünberger, S. Seide, D. Hahn, T. Karmainski, M. Piqueray, J. Embruch, S. Longerich, U. Mackfeld, K. E. Jaeger, W. Wiechert, M. Pohl and U. Krauss (2019). "Tailoring the properties of (catalytically)-active inclusion bodies." Microbial Cell Factories 18(1): 33-33

Jäger, V. D., M. Piqueray, S. Seide, M. Pohl, W. Wiechert, K.-E. Jaeger and U. Krauss (2019). "An Enzymatic 2-Step Cofactor and Co-Product Recycling Cascade towards a Chiral 1,2-Diol. Part II: Catalytically Active Inclusion Bodies." 361(11): 2616-2626

Jansen, R., N. Tenhaef, M. Moch, W. Wiechert, S. Noack and M. Oldiges (2019). "FeedER: a feedback-regulated enzyme-based slow-release system for fed-batch cultivation in microtiter plates." Bioprocess and biosystems engineering 42(11): 1843-1852 HyImPAct

Junker-Frohn, L. V., M. Lück, S. Schmittgen, J. Wensing, L. Carraresi, B. Thiele, T. Groher, J. J. Reimer, S. Bröring, G. Noga, A. Jupke, U. Schurr, B. Usadel, A. Wiese-Klinkenberg and A. Wormit (2019). "Tomato’s Green Gold: Bioeconomy Potential of Residual Tomato Leaf Biomass as a Novel Source for the Secondary Metabolite Rutin." ACS Omega 4(21): 19071-19080.

Kallscheuer, N., R. Menezes, A. Foito, M. H. da Silva, A. Braga, W. Dekker, D. M. Sevillano, R. Rosado-Ramos, C. Jardim, J. Oliveira, P. Ferreira, I. Rocha, A. R. Silva, M. Sousa, J. W. Allwood, M. Bott, N. Faria, D. Stewart, M. Ottens, M. Naesby, C. Nunes dos Santos and J. Marienhagen (2019). "Identification and Microbial Production of the Raspberry Phenol Salidroside that Is Active against Huntington’s Disease." Plant Physiol 179(3): 969-985. PNP-EXPRESS

Kappelmann, J., M. Beyß, K. Nöh and S. Noack (2019). "Separation of 13C- and 15N-Isotopologues of Amino Acids with a Primary Amine without Mass Resolution by Means of O-Phthalaldehyde Derivatization and Collision Induced Dissociation." Anal Chem 91(21): 13407-13417 HyImPAct

Klein, S., A. Fiebig, D. Neuwald, D. Dluhosch, L. Müller, G. Groth, G. Noga and M. Hunsche (2019). "Influence of the ethylene related signal-inhibiting octapeptide NOP-1 on postharvest ripening and quality of ‘Golden Delicious’ apples." J. Sci. Food Agric. RIPE

Koch, M., H. Schiedung, N. Siebers, S. McGovern, D. Hofmann, H. Vereecken and W. Amelung (2019). "Quantitative imaging of 33P in plant materials using 14C polymer references." Analytical and bioanalytical chemistry 411(6): 1253-1260

Kocks, C., J. Görtz, A. Holtz, M. Gausmann and A. Jupke (2019). "Electrochemical Crystallization Concept for Succinic Acid Reduces Waste Salt Production." 92(3): 221-228 R2HPBio HyImPAct

König, A., D. Scholzel, B. Uluca, T. Viennet, U. Akbey and H. Heise (2019). "Hyperpolarized MAS NMR of unfolded and misfolded proteins." Solid State Nuclear Magnetic Resonance 98: 1-11

Kubicki, S., A. Bollinger, N. Katzke, K.-E. Jaeger, A. Loeschcke and S. Thies (2019). "Marine Biosurfactants: Biosynthesis, Structural Diversity and Biotechnological Applications." Marine drugs 17(7): 408 Bio2

Milke, L., N. Kallscheuer, J. Kappelmann and J. Marienhagen (2019). "Tailoring Corynebacterium glutamicum towards increased malonyl-CoA availability for efficient synthesis of the plant pentaketide noreugenin." Microbial Cell Factories 18(1): 71-71 HyImPAct

Nietzel, T., M. Elsässer, C. Ruberti, J. Steinbeck, J. M. Ugalde, P. Fuchs, S. Wagner, L. Ostermann, A. Moseler, P. Lemke, M. D. Fricker, S. J. Müller-Schüssele, B. M. Moerschbacher, A. Costa, A. J. Meyer and M. Schwarzländer (2019). "The fluorescent protein sensor roGFP2-Orp1 monitors in vivo H2O2 and thiol redox integration and elucidates intracellular H2O2 dynamics during elicitor-induced oxidative burst in Arabidopsis."  221(3): 1649-1664. PlaMint

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Otten, J., N. Tenhaef, R. P. Jansen, J. Döbber, L. Jungbluth, S. Noack, M. Oldiges, W. Wiechert and M. Pohl (2019). "A FRET-based biosensor for the quantification of glucose in culture supernatants of mL scale microbial cultivations." Microbial Cell Factories 18(1): 143-143 HyImPAct

Otto, M., B. Wynands, T. Drepper, K.-E. Jaeger, S. Thies, A. Loeschcke, L. M. Blank and N. Wierckx (2019). "Targeting 16S rDNA for Stable Recombinant Gene Expression in Pseudomonas." ACS Synthetic Biology 8(8): 1901-1912 CombiCom, Bio2

Ploch, T., X. Zhao, J. Hüser, E. von Lieres, R. Hannemann-Tamás, U. Naumann, W. Wiechert, A. Mitsos and S. Noack (2019). "Multiscale dynamic modeling and simulation of a biorefinery." Biotechnol Bioeng 116(10): 2561-2574 HyImPAct

Saur, K. M., O. Brumhard, K. Scholz, H. Hayen and T. Tiso (2019). "A pH shift induces high-titer liamocin production in Aureobasidium pullulans." Appl Microbiol Biotechnol 103(12): 4741-4752 HyImPAct

Schäfer, P. M., P. McKeown, M. Fuchs, R. D. Rittinghaus, A. Hermann, J. Henkel, S. Seidel, C. Roitzheim, A. N. Ksiazkiewicz, A. Hoffmann, A. Pich, M. D. Jones and S. Herres-Pawlis (2019). "Tuning a robust system: N,O zinc guanidine catalysts for the ROP of lactide." Dalton Transactions 48(18): 6071-6082 R2HPBio

Schwacke, R., G. Y. Ponce-Soto, K. Krause, A. M. Bolger, B. Arsova, A. Hallab, K. Gruden, M. Stitt, M. E. Bolger and B. Usadel (2019). "MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis." Molecular Plant 12(6): 879-892

Schwinges, P., S. Pariyar, F. Jakob, M. Rahimi, L. Apitius, M. Hunsche, L. Schmitt, G. Noga, C. Langenbach, U. Schwaneberg and U. Conrath (2019). A bifuncitonal dermasseptin-thanatin dipeptide functionalizes the crop surface for sustainable pest management. Green Chemistry

Siebers, N., D. Hofmann, H. Schiedung, A. Landsrath, B. Ackermann, L. Gao, P. Mojzeš, N. D. Jablonowski, L. Nedbal and W. Amelung (2019). "Towards phosphorus recycling for agriculture by algae: Soil incubation and rhizotron studies using 33P-labeled microalgal biomass." Algal Research 43: 101634 AlgalFertilizer

Stella, R. G., J. Wiechert, S. Noack and J. Frunzke (2019). "Evolutionary engineering of Corynebacterium glutamicum." 14(9): 1800444 HyImPAct

Troost, K., A. Loeschcke, F. Hilgers, A. Y. Özgür, T. M. Weber, B. Santiago-Schübel, V. Svensson, J. Hage-Hülsmann, S. S. Habash, F. M. W. Grundler, A. S. S. Schleker, K.-E. Jaeger and T. Drepper (2019). "Engineered Rhodobacter capsulatus as a Phototrophic Platform Organism for the Synthesis of Plant Sesquiterpenoids." 10(1998) CombiCom

Villajuana-Bonequi, M., A. Matei, C. Ernst, A. Hallab, B. Usadel and G. Doehlemann (2019). "Cell type specific transcriptional reprogramming of maize leaves during Ustilago maydis induced tumor formation." Sci Rep 9(1): 10227

Von, C., Wagner, Lask, Magenau, Bauerle, C. Von, S. Warrach, Elbersen, Staritsky, E. Van, Iqbal, Jablonowski, Happe, Fernando, Scordia, Cosentino, Wulfmeyer, Lewandowski and Winkler (2019). "Prospects of Bioenergy Cropping Systems for A More Social-Ecologically Sound Bioeconomy." 9(10): 605 AP3

Wang, L., C. Kuchendorf and S. Willbold (2019). "Determination of individual chain length and chain-length distribution of polyphosphates in microalgae by 31P-DOSY-NMR." Algal Research 43: 101631 QuantiP

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Yang, B., C. Voiniciuc, L. Fu, S. Dieluweit, H. Klose and B. Usadel (2019). "TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3." The New phytologist 221(2): 881-895

Aschenbroich, J., K. P. Hussnaetter, P. Stoffels, T. Langner, S. Zander, B. Sandrock, M. Bölker, M. Feldbrügge and K. Schipper (2018) The germinal centre kinase Don3 is crucial for unconventional secretion of chitinase Cts1 in Ustilago maydis. BBA: Proteins and Proteomics, special issue unconventional protein secretion. BBA - Proteins and Proteomics

Baaske, J., P. Gonschorek, R. Engesser, A. Dominguez-Monedero, K. Raute, P. Fischbach, K. Müller, E. Cachat, W. W. A. Schamel, S. Minguet, J. A. Davies, J. Timmer, W. Weber and M. D. Zurbriggen (2018). "Dual-controlled optogenetic system for the rapid down-regulation of protein levels in mammalian cells." Sci Rep 8(1): 15024. CombiCom

Berg, S., L. M. Cloutier and S. Bröring (2018). "Collective stakeholder representations and perceptions of drivers of novel biomass-based value chains." Journal of Cleaner Production 200: 231-24

Bollinger, A., S. Thies, N. Katzke and K.-E. Jaeger (2018). "The biotechnological potential of marine bacteria in the novel lineage of Pseudomonas pertucinogena." Microbial Biotechnology. Bio2

Borge, L. and S. Bröring (2018). "What affects technology transfer in emerging knowledge areas? A multi-stakeholder concept mapping study in the bioeconomy." Journal of Technology Transfer. S2B-BioEcon
Bronikowski, A., K. Koschorreck and V. B. Urlacher (2018). "Redesign of a New Manganese Peroxidase Highly Expressed in Pichia pastoris towards a Lignin-Degrading Versatile Peroxidase." ChemBioChem 19(23): 2481-2489. BioDeg
Carraresi, L., S. Berg and S. Bröring (2018). "Emerging value chains within the bioeconomy: Structural changes in the case of phosphate recovery." Journal of Cleaner Production 183: 87-101. P-ENG
Champreda, V., P. Unrean, B. Klein, J. Gätgens and S. Noack (2018). "Elucidating cellular mechanisms of Saccharomyces cerevisiae tolerant to combined lignocellulosic-derived inhibitors using high-throughput phenotyping and multiomics analyses." FEMS Yeast Research 18(8). HyImPAct
Classen, T. and J. Pietruszka (2018). "Complex molecules, clever solutions – Enzymatic approaches towards natural product and active agent syntheses." Bioorganic & Medicinal Chemistry 26(7): 1285-1303. CombiCom
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Endres, S., M. Wingen, J. Torra, R. Ruiz-González, T. Polen, G. Bosio, N. L. Bitzenhofer, F. Hilgers, T. Gensch, S. Nonell, K.-E. Jaeger and T. Drepper (2018). "An optogenetic toolbox of LOV-based photosensitizers for light-driven killing of bacteria." Sci Rep 8(1): 15021.CombiCom

Freier, L. and E. von Lieres (2018). "Robust Multi-Objective Global Optimization of Stochastic Processes With a Case Study in Gradient Elution Chromatography." Biotechnology Journal 13(1): 1700257. BIOExpresSPro

Freudl, R. (2018). "Signal peptides for recombinant protein secretion in bacterial expression systems." Microbial Cell Factories 17(1): 52. BIOExpresSPro

Groher, T., S. Schmittgen, A. Fiebig, G. Noga and M. Hunsche (2018). "Suitability of fluorescence indices for the estimation of fruit maturity compounds in tomato fruits." Journal of the Science and Food Agriculture 98(15): 5656-5665. InducTomE
Groher, T., S. Schmittgen, G. Noga and M. Hunsche (2018). "Limitation of mineral supply as tool for the induction of secondary metabolites accumulation in tomato leaves." Plant Physiology and Biochemistry 130: 105-111. InducTomE
Hage-Hülsmann, J., A. Grünberger, S. Thies, B. Santiago-Schübel, A. S. Klein, J. Pietruszka, D. Binder, F. Hilgers, A. Domröse, T. Drepper, D. Kohlheyer, K.-E. Jaeger and A. Loeschcke (2018). "Natural biocide cocktails: Combinatorial antibiotic effects of prodigiosin and biosurfactants." PLoS One 13(7): e0200940. CombiCom, Bio2
Hartmann, S. K., Y. Stockdreher, G. Wandrey, H. Hosseinpour Tehrani, T. Zambanini, A. J. Meyer, J. Büchs, L. M. Blank, M. Schwarzländer and N. Wierckx (2018). "Online in vivo monitoring of cytosolic NAD redox dynamics in Ustilago maydis." Biochimica et Biophysica Acta (BBA) - Bioenergetics 1859(10): 1015-1024. ROXENSE
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Hemmerich, J., N. Tenhaef, C. Steffens, J. Kappelmann, M. Weiske, S. J. Reich, W. Wiechert, M. Oldiges and S. Noack (2018). "Less Sacrifice, More Insight: Repeated Low-Volume Sampling of Microbioreactor Cultivations Enables Accelerated Deep Phenotyping of Microbial Strain Libraries." Biotechnology Journal. HyImPAct
Herweg, E., M. Schöpping, K. Rohr, A. Siemen, O. Frank, T. Hofmann, U. Deppenmeier and J. Büchs (2018). "Production of the potential sweetener 5-ketofructose from fructose in fed-batch cultivation with Gluconobacter oxydans." Bioresource Technology 259: 164-172. GLUFACT
Ihling, N., N. Bittner, S. Diederichs, M. Schelden, A. Korona, G. T. Höfler, A. Fulton, K.-E. Jaeger, K. Honda, H. Ohtake and J. Büchs (2018). "Online measurement of the respiratory activity in shake flasks enables the identification of cultivation phases and patterns indicating recombinant protein production in various Escherichia coli host strains." Biotechnol. Prog. 34(2): 315-327. BioBreak
Jäger, V. D., R. Lamm, R. Kloß, E. Kaganovitch, A. Grünberger, M. Pohl, J. Büchs, K.-E. Jaeger and U. Krauss (2018). "A Synthetic Reaction Cascade Implemented by Colocalization of Two Proteins within Catalytically Active Inclusion Bodies." ACS Synthetic Biology 7(9): 2282-2295. CatIBs

Kallscheuer, N. and J. Marienhagen (2018). "Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids." Microbial Cell Factories 17(1): 70-70. HyImPAct
Klein, A. S., H. U. C. Brass, D. P. Klebl, T. Classen, A. Loeschcke, T. Drepper, S. Sievers, K.-E. Jaeger and J. Pietruszka (2018). "Cover Feature: Preparation of Cyclic Prodiginines by Mutasynthesis in Pseudomonas putida KT2440." ChemBioChem 19(14): 1462-1462. CombiCom, Bio2
Kloss, R., T. Karmainski, V. D. Jäger, D. Hahn, A. Grünberger, M. Baumgart, U. Krauss, K.-E. Jaeger, W. Wiechert and M. Pohl (2018). "Tailor-made catalytically active inclusion bodies for different applications in biocatalysis." Catalysis Science & Technology 8(22): 5816-5826. CatIBs
Kloss, R., M. H. Limberg, U. Mackfeld, D. Hahn, A. Grünberger, V. D. Jäger, U. Krauss, M. Oldiges and M. Pohl (2018). "Catalytically active inclusion bodies of L-lysine decarboxylase from E. coli for 1,5-diaminopentane production." Sci Rep 8(1): 5856-5856. CatIBs
Kranz, A., A. Steinmann, U. Degner, A. Mengus-Kaya, S. Matamouros, M. Bott and T. Polen (2018). "Global mRNA decay and 23S rRNA fragmentation in Gluconobacter oxydans 621H." BMC genomics 19(1): 753-753. GLUFACT
Milić, D., M. Dick, D. Mulnaes, C. Pfleger, A. Kinnen, H. Gohlke and G. Groth (2018). "Recognition motif and mechanism of ripening inhibitory peptides in plant hormone receptor ETR1." Sci Rep 8(1): 3890-3890. RIPE
Morschett, H., V. Loomba, G. Huber, W. Wiechert, E. von Lieres and M. Oldiges (2018). "Laboratory-scale photobiotechnology—current trends and future perspectives." FEMS Microbiology Letters 365(1). HyImPAct
Müller, M. J., S. Stachurski, P. Stoffels, K. Schipper, M. Feldbrügge and J. J. J. o. B. E. Büchs (2018). "Online evaluation of the metabolic activity of Ustilago maydis on (poly)galacturonic acid." Journal of Biological Engineering 12(1): 34. PectiLyse

Pariyar, S. and G. Noga (2018). "Rainfall does not impair particulate matter accumulation on peri-urban field crops, but improves photosynthetic activity at UV exposure." Environmental and Experimental Botany 156. greenRelease
Schreiber, C., H. Schiedung, L. Harrison, C. Briese, B. Ackermann, J. Kant, S. D. Schrey, D. Hofmann, D. Singh, O. Ebenhöh, W. Amelung, U. Schurr, T. Mettler-Altmann, G. Huber, N. D. Jablonowski and L. Nedbal (2018). Evaluating potential of green alga Chlorella vulgaris to accumulate phosphorus and to fertilize nutrient-poor soil substrates for crop plants. Journal of Applied Phycology.  AlgalFertilizer

Siebers, M., T. Rohr, M. Ventura, V. Schütz, S. Thies, F. Kovacic, K.-E. Jaeger, M. Berg, P. Dörmann and M. Schulz (2018). "Disruption of microbial community composition and identification of plant growth promoting microorganisms after exposure of soil to rapeseed-derived glucosinolates." PLoS One 13(7): e0200160. LIPANO
Siemen, A., K. Kosciow, P. Schweiger, U. J. A. M. Deppenmeier and Biotechnology (2018). "Production of 5-ketofructose from fructose or sucrose using genetically modified Gluconobacter oxydans strains." Appl Microbiol Biotechnol 102(4): 1699-1710. GLUFACT

Singh, D., L. Nedbal and O. Ebenhöh (2018). "Modelling phosphorus uptake in microalgae." Biochemical Society Transactions 46(2): 483-490. AlgalFertilizer
Tenhaef, N., C. Brüsseler, A. Radek, R. Hilmes, P. Unrean, J. Marienhagen and S. Noack (2018). "Production of d-xylonic acid using a non-recombinant Corynebacterium glutamicum strain." Bioresource Technology 268: 332-339. HyImPAct
Terfrüchte, M., S. Wewetzer, P. Sarkari, D. Stollewerk, M. Franz-Wachtel, B. Macek, T. Schlepütz, M. Feldbrügge, J. Büchs and K. Schipper (2018). "Tackling destructive proteolysis of unconventionally secreted heterologous proteins in Ustilago maydis." J Biotechnol 284: 37-51. UstiOpt
Uluca, B., T. Viennet, D. Petrović, H. Shaykhalishahi, F. Weirich, A. Gönülalan, B. Strodel, M. Etzkorn, W. Hoyer and H. Heise (2018). "DNP-Enhanced MAS NMR: A Tool to Snapshot Conformational Ensembles of α-Synuclein in Different States." Biophysical Journal 114(7): 1614-1623. BioCaPS

Unrean, P., J. Gätgens, B. Klein, S. Noack and V. Champreda (2018). "Elucidating cellular mechanisms of Saccharomyces cerevisiae tolerant to combined lignocellulosic-derived inhibitors using high-throughput phenotyping and multiomics analyses." FEMS Yeast Research 18(8).  HyImPAct    

Weidener, D., H. Klose, W. Leitner, U. Schurr, B. Usadel, P. Domínguez de María and P. M. Grande (2018). "One-Step Lignocellulose Fractionation by using 2,5-Furandicarboxylic Acid as a Biogenic and Recyclable Catalyst." ChemSusChem 11(13): 2051-2056. AP3
Zhang, S., C. Bisterfeld, J. Bramski, N. Vanparijs, B. G. De Geest, J. Pietruszka, A. Böker and S. Reinicke (2018). "Biocatalytically Active Thin Films via Self-Assembly of 2-Deoxy-d-ribose-5-phosphate Aldolase–Poly(N-isopropylacrylamide) Conjugates." Bioconjugate Chemistry 29(1): 104-116. FlowCom

Borge, L. and S. Bröring (2017). Exploring effectiveness of technology transfer in interdisciplinary settings: The case of the bioeconomy. Creativity and Innovation Management 26(3): 311-322.  S2B-BioEcon

Bronikowski, A., P.-L. Hagedoorn, K. Koschorreck and V. B. Urlacher (2017). Expression of a new laccase from Moniliophthora roreri at high levels in Pichia pastoris and its potential application in micropollutant degradation. AMB Express 7: 73. BioDeg

Damm, T., P. M. Grande, N. D. Jablonowski, B. Thiele, U. Disko, U. Mann, U. Schurr, W. Leitner, B. Usadel, P. Domínguez de María and H. Klose (2017). OrganoCat pretreatment of perennial plants: Synergies between a biogenic fractionation and valuable feedstocks. Bioresource Technology 244(Part 1): 889-896. OrCaCel

Damm, T., S. Pattathil, M. Günl, N. D. Jablonowski, M. O'Neill, K. S. Grün, P. M. Grande, W. Leitner, U. Schurr, B. Usadel and H. Klose (2017). Insights into cell wall structure of sida hermaphrodita and its influence on recalcitrance. Carbohydrate Polymers 168: 94-102.   OrCaCel 

De Col, V., P. Fuchs, T. Nietzel, M. Elsasser, C. P. Voon, A. Candeo, I. Seeliger, M. D. Fricker, C. Grefen, I. M. Moller, A. Bassi, B. L. Lim, M. Zancani, A. J. Meyer, A. Costa, S. Wagner and M. Schwarzlander (2017). ATP sensing in living plant cells reveals tissue gradients and stress dynamics of energy physiology. Elife 6.   CoSens

Domröse, A., R. Weihmann, S. Thies, K.-E. Jaeger, T. Drepper and A. Loeschcke (2017). Rapid generation of recombinant Pseudomonas putida secondary metabolite producers using yTREX. Synthetic and Systems Biotechnology 2(4): 310-319.   CombiCom

Frantzeskakis, L., K. J. Courville, L. Plucker, R. Kellner, J. Kruse, A. Brachmann, M. Feldbrugge and V. Gohre (2017). The plant-dependent life cycle of thecaphora thlaspeos: A smut fungus adapted to brassicaceae. Mol Plant Microbe Interact: Mpmi08160164r.   PlaMint

Heck, A. and T. Drepper (2017). Engineering photosynthetic α-proteobacteria for the production of recombinant proteins and terpenoids. Modern topics in the phototrophic prokaryotes: Environmental and applied aspects. Hallenbeck, P.C. Cham, Springer International Publishing: 395-425.   BIOExpresSPro

Hemmerich, J., L. Freier, W. Wiechert, E. von Lieres and M. Oldiges (2017). "Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology." J Vis Exp(130): 56234. BIOExpresSPro

Heydenreich, F. M., T. Miljus, R. Jaussi, R. Benoit, D. Milic and D. B. Veprintsev (2017). High-throughput mutagenesis using a two-fragment PCR approach. Sci Rep 7(1): 6787. RIPE

Hussner, A., I. Stiers, M. J. J. M. Verhofstad, E. S. Bakker, B. M. C. Grutters, J. Haury, J. L. C. H. van Valkenburg, G. Brundu, J. Newman, J. S. Clayton, L. W. J. Anderson and D. Hofstra (2017). Management and control methods of invasive alien freshwater aquatic plants: A review. Aquatic Botany 136: 112-137.   AquaPro

Jablonowski, N. D., T. Kollmann, M. Nabel, T. Damm, H. Klose, M. Müller, M. Bläsing, S. Seebold, S. Krafft, I. Kuperjans, M. Dahmen and U. Schurr (2017). Valorization of sida (sida hermaphrodita) biomass for multiple energy purposes. GCB Bioenergy 9(1): 202-214.   OrCaCel 

Junker LV, T. B., Wiese-Klinkenberg A (2017) Induktion des Sekundärmetabolismus in Tomatenpflanzen zur alternativen Verwendung der Blattbiomasse. DGG-Proceedings, 7(10), 1-5. InducTomE

Kellner, R. and V. Göhre (2017). Thecaphora thlaspeos–ein Brandpilz spezialisiert auf Modellpflanzen. BIOspektrum 23(5): 498-500.  PlaMint

Kessenbrock, M., S. M. Klein, L. Muller, M. Hunsche, G. Noga and G. Groth (2017). Novel Protein-Protein Inhibitor Based Approach to Control Plant Ethylene Responses: Synthetic Peptides for Ripening Control. Front Plant Sci 8: 1528. RIPE

Klein, A. S., A. Domröse, P. Bongen, H. U. C. Brass, T. Classen, A. Loeschcke, T. Drepper, L. Laraia, S. Sievers, K.-E. Jaeger and J. Pietruszka (2017). New Prodigiosin Derivatives Obtained by Mutasynthesis in Pseudomonas putida. ACS Synthetic Biology 6(9):1757–1765. CombiCom

Krauss, U., V. D. Jager, M. Diener, M. Pohl and K. E. Jaeger (2017). Catalytically-active inclusion bodies-Carrier-free protein immobilizates for application in biotechnology and biomedicine. J Biotechnol 258: 136-147. CatIBs

Loeschcke, A., D. Dienst, V. Wewer, J. Hage-Hulsmann, M. Dietsch, S. Kranz-Finger, V. Huren, S. Metzger, V. B. Urlacher, T. Gigolashvili, S. Kopriva, I. M. Axmann, T. Drepper and K. E. Jaeger (2017). The photosynthetic bacteria Rhodobacter capsulatus and Synechocystis sp. PCC 6803 as new hosts for cyclic plant triterpene biosynthesis. PLoS One 12(12): e0189816.   CombiCom

Meurer, R. A., S. Kemper, S. Knopp, T. Eichert, F. Jakob, H. E. Goldbach, U. Schwaneberg and A. Pich (2017). Biofunctional Microgel-Based Fertilizers for Controlled Foliar Delivery of Nutrients to Plants. Angew Chem Int Ed Engl 56(26): 7380-7386.  GreenGel, RIPE

Moudříková, Š., L. Nedbal, A. Solovchenko and P. Mojzeš (2017). Raman microscopy shows that nitrogen-rich cellular inclusions in microalgae are microcrystalline guanine. Algal Research 23: 216-222.   AlgalFertilizer

Moudrikova, S., A. Sadowsky, S. Metzger, L. Nedbal, T. Mettler-Altmann and P. Mojzes (2017). Quantification of Polyphosphate in Microalgae by Raman Microscopy and by a Reference Enzymatic Assay. Anal Chem 89(22): 12006-12013.  AlgalFertilizer

Reinicke, S., H. C. Rees, P. Espeel, N. Vanparijs, C. Bisterfeld, M. Dick, R. R. Rosencrantz, G. Brezesinski, B. G. de Geest, F. E. Du Prez, J. Pietruszka and A. Boker (2017). Immobilization of 2-deoxy-d-ribose-5-phosphate aldolase in polymeric thin films via the langmuir-schaefer technique. ACS Appl Mater Interfaces 9(9): 8317-8326.   FlowCom

Terfrüchte, M., M. Reindl, S. Jankowski, P. Sarkari, M. Feldbrügge and K. Schipper (2017). Applying unconventional secretion in ustilago maydis for the export of functional nanobodies. International Journal of Molecular Sciences 18(5): 937.  UstiOpt

Viennet, T., M. M. Wördehoff, B. Uluca, C. Poojari, H. Shaykhalishahi, D. Willbold, B. Strodel, H. Heise, A. K. Buell, W. Hoyer and M. Etzkorn (2017). "A structural and kinetic link between membrane association and amyloid fibril formation of α-Synuclein." bioRxiv: 173724. BioCaPS

Welters, T., T. Horn, A. J. Ruff, U. Schwaneberg and J. Buchs (2017). Novel technique for high throughput measurement of active monooxygenase concentration. Biotechnol Bioeng 114(4): 929-933.   MoRe-Plants

Worgull, D. Ö., Laura; Strache, Joss, Pepe; Friedrichs, Teresa; Ullrich, Patrick (2017) Enantioselective synthesisof 2,3-dihydrofurans via ammonium ylides. Eur J Org Chem, 6077-6080. PrimACs

Zambanini, T., S. K. Hartmann, L. M. Schmitz, L. Büttner, H. H. Tehrani, E. Geiser, M. Beudels, D. Venc, G. Wandrey, J. Büchs, M. Schwarzländer, L. M. Blank and N. Wierckx (2017)  Promoters from the itaconate cluster of Ustilago maydis are induced by nitrogen depletion. Fungal Biol Biotechnol 4:11. ROXENSE

Zhao, X, Noack, S, Wiechert, W and Lieres, EV (2017). Dynamic flux balance analysis with nonlinear objective function. J Math Biol.   BEProMod

Bisterfeld, C., I. Küberl, M. Dick and J. Pietruszka (2016). A fluorogenic screening for enantio- and diastereoselectivity of 2-deoxy-d-ribose-5-phosphate aldolases. Synlett 27(01): 11-16.   FlowCom

Bosch, K., L. Frantzeskakis, M. Vranes, J. Kamper, K. Schipper and V. Gohre (2016). Genetic manipulation of the plant pathogen ustilago maydis to study fungal biology and plant microbe interactions. J Vis Exp(115).   PlaMint

Damm, T., U. Commandeur, R. Fischer, B. Usadel and H. Klose (2016). Improving the utilization of lignocellulosic biomass by polysaccharide modification. Process Biochemistry 51(2): 288-296.   OrCaCel

Dick, M., R. Hartmann, O. H. Weiergraber, C. Bisterfeld, T. Classen, M. Schwarten, P. Neudecker, D. Willbold and J. Pietruszka (2016). Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: Structural insights and protective strategies. Chemical Science 7(7): 4492-4502.   FlowCom

Dick, M., O. H. Weiergräber, T. Classen, C. Bisterfeld, J. Bramski, H. Gohlke and J. Pietruszka (2016). Trading off stability against activity in extremophilic aldolases. Scientific Reports 6: 17908.   FlowCom

Diener, M., B. Kopka, M. Pohl, K.-E. Jaeger and U. Krauss (2016). Fusion of a coiled-coil domain facilitates the high-level production of catalytically active enzyme inclusion bodies. ChemCatChem 8(1): 142-152.   CatIBs

Freier, L., J. Hemmerich, K. Schöler, W. Wiechert, M. Oldiges and E. von Lieres (2016). Framework for kriging-based iterative experimental analysis and design: Optimization of secretory protein production in corynebacterium glutamicum. Engineering in Life Sciences 16(6): 538-549.   BIOExpresSPro

Geiser, E., F. Ludwig, T. Zambanini, N. Wierckx and L. M. Blank (2016). Draft genome sequences of itaconate-producing ustilaginaceae. Genome Announc 4(6).   PectiLyse

Geiser, E., S. K. Przybilla, M. Engel, W. Kleineberg, L. Buttner, E. Sarikaya, T. D. Hartog, J. Klankermayer, W. Leitner, M. Bolker, L. M. Blank and N. Wierckx (2016). Genetic and biochemical insights into the itaconate pathway of ustilago maydis enable enhanced production. Metab Eng 38: 427-435.  PectiLyse

Geiser, E., M. Reindl, L. M. Blank, M. Feldbrugge, N. Wierckx and K. Schipper (2016). Activating intrinsic carbohydrate-active enzymes of the smut fungus ustilago maydis for the degradation of plant cell wall components. Appl Environ Microbiol 82(17): 5174-5185.   UstiLyse

Hemmerich, J., P. Rohe, B. Kleine, S. Jurischka, W. Wiechert, R. Freudl and M. Oldiges (2016). Use of a sec signal peptide library from bacillus subtilis for the optimization of cutinase secretion in corynebacterium glutamicum. Microbial Cell Factories 15(1): 208.   BIOExpresSPro

Kosciow, K., C. Domin, P. Schweiger and U. Deppenmeier (2016). Extracellular targeting of an active endoxylanase by a tolb negative mutant of gluconobacter oxydans. J Ind Microbiol Biotechnol 43(7): 989-999.   GLUFACT

Lenders, M. H., T. Beer, S. H. Smits and L. Schmitt (2016). In vivo quantification of the secretion rates of the hemolysin a type i secretion system. Sci Rep 6: 33275.   BioBreak

Li, Z., N. Omranian, L. Neumetzler, T. Wang, T. Herter, B. Usadel, T. Demura, P. Giavalisco, Z. Nikoloski and S. Persson (2016). A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiol 172(2): 1334-1351.   OrCaCel

Lotz, J., M. Schwalbach and U. Naumann (2016). A case study in adjoint sensitivity analysis of parameter calibration. Procedia Computer Science 80: 201-211.  BEProMod 

MacKellar, D., L. Lieber, J. S. Norman, A. Bolger, C. Tobin, J. W. Murray, M. Oksaksin, R. L. Chang, T. J. Ford, P. Q. Nguyen, J. Woodward, H. R. Permingeat, N. S. Joshi, P. A. Silver, B. Usadel, A. W. Rutherford, M. L. Friesen and J. Prell (2016). Streptomyces thermoautotrophicus does not fix nitrogen. Scientific Reports 6: 20086.   BIOExpresSPro

Nguyen, G. T., G. Erlenkamp, O. Jack, A. Kuberl, M. Bott, F. Fiorani, H. Gohlke and G. Groth (2016). Chalcone-based selective inhibitors of a c4 plant key enzyme as novel potential herbicides. Sci Rep 6: 27333.   C4-PSH

Safiran, N., J. Lotz and U. Naumann (2016). Algorithmic differentiation of numerical methods: Second-order adjoint solvers for parameterized systems of nonlinear equations. Procedia Computer Science 80: 2231-2235.   BEProMod

Sarkari, P., M. Feldbrügge and K. Schipper (2016). The corn smut fungus ustilago maydis as an alternative expression system for biopharmaceuticals. Gene expression systems in fungi: Advancements and applications. Schmoll, M. and Dattenböck, C. Cham, Springer International Publishing: 183-200.   UstiOpt

Solovchenko, A., A. M. Verschoor, N. D. Jablonowski and L. Nedbal (2016). Phosphorus from wastewater to crops: An alternative path involving microalgae. Biotechnol Adv 34(5): 550-564.   AlgalFertilizer

Stock, J., M. Terfruchte and K. Schipper (2016). A reporter system to study unconventional secretion of proteins avoiding n-glycosylation in ustilago maydis. Methods Mol Biol 1459: 149-160.   UstiOpt

Voiniciuc, C., E. Zimmermann, M. H. Schmidt, M. Gunl, L. Fu, H. M. North and B. Usadel (2016). Extensive natural variation in arabidopsis seed mucilage structure. Front Plant Sci 7: 803.   EnZIP

Witzel, C.-P. and R. Finger (2016). Economic evaluation of miscanthus production – a review. Renewable and Sustainable Energy Reviews 53(C): 681-696.   MisCas

Domrose, A., A. S. Klein, J. Hage-Hulsmann, S. Thies, V. Svensson, T. Classen, J. Pietruszka, K. E. Jaeger, T. Drepper and A. Loeschcke (2015). Efficient recombinant production of prodigiosin in pseudomonas putida. Front Microbiol 6: 972.   LIPANO

Grande, P. M., J. Viell, N. Theyssen, W. Marquardt, P. Dominguez de Maria and W. Leitner (2015). Fractionation of lignocellulosic biomass using the organocat process. Green Chemistry 17(6): 3533-3539.   OrCaCel

Kiefler, I., S. Bringer and M. Bott (2015). Sdhe-dependent formation of a functional acetobacter pasteurianus succinate dehydrogenase in gluconobacter oxydans--a first step toward a complete tricarboxylic acid cycle. Appl Microbiol Biotechnol 99(21): 9147-9160.   GLUFACT

Klose, H., M. Gunl, B. Usadel, R. Fischer and U. Commandeur (2015). Cell wall modification in tobacco by differential targeting of recombinant endoglucanase from trichoderma reesei. BMC Plant Biol 15: 54.   EnZIP

Lang, V., B. Usadel and G. Obermeyer (2015). De novo sequencing and analysis of the lily pollen transcriptome: An open access data source for an orphan plant species. Plant Mol Biol 87(1-2): 69-80.   PNP-EXPRESS

Loeschcke, A. and S. Thies (2015). Pseudomonas putida-a versatile host for the production of natural products. Appl Microbiol Biotechnol 99(15): 6197-6214.   LIPANO

Lotz, J., U. Naumann, R. Hannemann-Taḿas, T. Ploch and A. Mitsos (2015). Higher-order discrete adjoint ode solver in c++ for dynamic optimization. Procedia Computer Science 51: 256-265.   BEProMod

María, P. D. d., P. M. Grande and W. Leitner (2015). Current trends in pretreatment and fractionation of lignocellulose as reflected in industrial patent activities. Chemie Ingenieur Technik 87(12): 1686-1695.   OrCaCel

Meyer, M., P. Schweiger and U. Deppenmeier (2015). Succinic semialdehyde reductase gox1801 from gluconobacter oxydans in comparison to other succinic semialdehyde-reducing enzymes. Appl Microbiol Biotechnol 99(9): 3929-3939.   GLUFACT

Moseler, A., I. Aller, S. Wagner, T. Nietzel, J. Przybyla-Toscano, U. Muhlenhoff, R. Lill, C. Berndt, N. Rouhier, M. Schwarzlander and A. J. Meyer (2015). The mitochondrial monothiol glutaredoxin s15 is essential for iron-sulfur protein maturation in arabidopsis thaliana. Proc Natl Acad Sci U S A 112(44): 13735-13740.   CoSens

Torra, J., A. Burgos-Caminal, S. Endres, M. Wingen, T. Drepper, T. Gensch, R. Ruiz-Gonzalez and S. Nonell (2015). Singlet oxygen photosensitisation by the fluorescent protein pp2fbfp l30m, a novel derivative of pseudomonas putida flavin-binding pp2fbfp. Photochem Photobiol Sci 14(2): 280-287.   BIOExpresSPro

van Summeren-Wesenhagen, P. V. and J. Marienhagen (2015). Metabolic engineering of escherichia coli for the synthesis of the plant polyphenol pinosylvin. Appl Environ Microbiol 81(3): 840-849.   PNP-EXPRESS

van Summeren-Wesenhagen, P. V., R. Voges, A. Dennig, S. Sokolowsky, S. Noack, U. Schwaneberg and J. Marienhagen (2015). Combinatorial optimization of synthetic operons for the microbial production of p-coumaryl alcohol with escherichia coli. Microb Cell Fact 14: 79.   PNP-EXPRESS

Voiniciuc, C., M. Gunl, M. H. Schmidt and B. Usadel (2015). Highly branched xylan made by irregular xylem14 and mucilage-related21 links mucilage to arabidopsis seeds. Plant Physiol 169(4): 2481-2495.   EnZIP

Voiniciuc, C., M. H. Schmidt, A. Berger, B. Yang, B. Ebert, H. V. Scheller, H. M. North, B. Usadel and M. Gunl (2015). Mucilage-related10 produces galactoglucomannan that maintains pectin and cellulose architecture in arabidopsis seed mucilage. Plant Physiol 169(1): 403-420.   EnZIP

Kosciow, K., N. Zahid, P. Schweiger and U. Deppenmeier (2014). Production of a periplasmic trehalase in gluconobacter oxydans and growth on trehalose. J Biotechnol 189: 27-35.   GLUFACT

Loehrer, M., A. Vogel, B. Huettel, R. Reinhardt, V. Benes, S. Duplessis, B. Usadel and U. Schaffrath (2014). On the current status of phakopsora pachyrhizi genome sequencing. Front Plant Sci 5: 377.   GLUFACT; BIOExpresSPro

Noack, S. and W. Wiechert (2014). Quantitative metabolomics: A phantom? Trends Biotechnol 32(5): 238-244.  

Paulus, J. K., K. Forster and G. Groth (2014). Direct and selective small-molecule inhibition of photosynthetic pep carboxylase: New approach to combat c4 weeds in arable crops. FEBS Lett 588(12): 2101-2106.   C4-PSH

Terfruchte, M., B. Joehnk, R. Fajardo-Somera, G. H. Braus, M. Riquelme, K. Schipper and M. Feldbrugge (2014). Establishing a versatile golden gate cloning system for genetic engineering in fungi. Fungal Genet Biol 62: 1-10.  

Zeiser, J., L. H. Muhlenbeck, P. Schweiger and U. Deppenmeier (2014). Characterization of a periplasmic quinoprotein from sphingomonas wittichii that functions as aldehyde dehydrogenase. Appl Microbiol Biotechnol 98(5): 2067-2079.

Feldbrugge, M., R. Kellner and K. Schipper (2013). The biotechnological use and potential of plant pathogenic smut fungi. Appl Microbiol Biotechnol 97(8): 3253-3265.  

Geiser, E., N. Wierckx, M. Zimmermann and L. M. Blank (2013). Identification of an endo-1,4-beta-xylanase of ustilago maydis. BMC Biotechnol 13: 59.